Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq406 248 8e-61 seq619 111 1e-19 >seq406 Length=364117 Score = 248 bits (274), Expect = 8e-61 Identities = 997/1539 (65%), Gaps = 52/1539 (3%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| | || ||||| || | |||||| | | | || | ||||| ||| | | | Sbjct 267891 TTGACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCC 267832 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || | ||||| || ||||| | || ||||| |||| || || |||||| ||||| | Sbjct 267831 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGC 267772 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAA-AGTTTGCCAGTCCCA 147071 | || || | || |||| ||| || ||||||| || || ||||||||| Sbjct 267771 AGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTT-CCAGTCCCA 267713 Query 147072 CA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGA 147129 || ||| | || ||| | |||||||||||||||||| | || ||| ||| Sbjct 267712 CAGGTCG--GTCGGTGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGATGGGC 267655 Query 147130 CTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAA-TTCACAGCTTGCCTCGAG 147188 ||| || |||| |||| ||| || ||||| | | ||| ||||| ||||| || Sbjct 267654 GAGCCCTCGTACGTCTCGTAGGGGCCGA-GCTCTGCGGCGAGTTCGCAGCTGGCCTCCAG 267596 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248 || | | ||| ||||| ||| ||| || |||| || | ||||| ||| || Sbjct 267595 GGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCTTCGGGGCTTTC 267536 Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 | | || |||| || | ||||||||||||| |||||||| |||| ||||| || Sbjct 267535 GAACGGATGTCGCATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGG 267476 Query 147309 TCGATGCTTTTCGTTG-----CTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCA 147363 | || | |||| || |||||| | | || |||| ||| || Sbjct 267475 CCTGTGGCGCTTGTTGGACGTCTCGGCTTCGGGGACC-----GGGTAGTAATTGATGTCG 267421 Query 147364 ATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCA 147423 || |||||||||||||| ||| | || || || | | || |||| ||| || Sbjct 267420 ATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCG 267361 Query 147424 TAAGTCCCGTCTT-CGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGAC 147482 |||||| ||| || |||||| || ||| | |||||| || ||||| |||||||| Sbjct 267360 AAAGTCCGCTCTGGCGTGACGTAC--AT--GTTGAGGGCGATGGAGGCCAGGTTGCAGAC 267305 Query 147483 GGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTAT 147542 |||| ||| || | | |||||| ||| | || | ||| |||||||||||||| || Sbjct 267304 GGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGAT 267245 Query 147543 GACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 | |||| || ||||| ||||| |||| ||||| ||||| ||| |||||||||| || Sbjct 267244 GGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGG 267185 Query 147603 TCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTA-TGCAGGTCCTGCGC--TC-GCA 147658 ||||| ||| || | || | ||| | || || | |||||| || || Sbjct 267184 CGTCCCGGTTTCGGTCTGGGACTCGATGAT-GGCGTACCAGAGCTGCTGCGCCTTCACCA 267126 Query 147659 CCCGCTGCCGATAGCGGCCC-TCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCG 147717 ||| || | | | ||| || || || || | ||| | | ||| ||||| || Sbjct 267125 CCCTCTTC----ACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTCCTCT 267070 Query 147718 CCGTAGCAATCGGCAAGGCCGGGACACT-GATGCGGACACATCAGCGACCACATGTCGTC 147776 || |||| ||| | || || ||||||| | || |||||||||| ||||| | || Sbjct 267069 CCCCAGCACTCGTCCAGCCCAGGACACTCGCTG-GGACACATCAAGGACCAGTCCTGGT- 267012 Query 147777 CGCGTT-AACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC--G 147833 || || || | ||| ||||| ||||| | ||||| ||||| | ||| || | | Sbjct 267011 TGCTTTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGG 266952 Query 147834 CGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGC 147893 | || ||| ||||| || |||| |||| | || | | | | |||| Sbjct 266951 CTCTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAA 266894 Query 147894 GTGCCAGGGTTCAATGTAGACGGCCAGCGCACC---TTTACGCTTTCCGCCCTGGTCGAC 147950 |||||| ||||| | ||| | ||| | || || | | || |||||||||||||| Sbjct 266893 GTGCCACGGTTCCAGGTACATGGCAAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGAC 266834 Query 147951 ATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTT 148010 | ||| || ||||||| | || | || ||| || ||| ||| | | ||||||| Sbjct 266833 GTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTT 266774 Query 148011 GGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC 148070 |||| || | ||| || | ||| | | ||| ||||| || || || Sbjct 266773 GGTGCCGGCAATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCCCC 266714 Query 148071 GCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTC 148130 || |||| || ||| ||||| | || || ||||||||| ||||||||||| Sbjct 266713 AGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTC 266654 Query 148131 GTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCG--CGTTCCCGCCG-A 148187 || || | | |||||| || || ||| ||||| ||| | ||||| || Sbjct 266653 GTCCTTCATGGCAAGCAGGAAGCAGCTGGACAGCTGCGG---CCGGTTGGTCCCGGCGTT 266597 Query 148188 GAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAAT 148247 ||| ||||| ||| ||||| || ||| | || | || | | || ||||| || Sbjct 266596 GAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGAT 266537 Query 148248 AGCGTCTTCGATGTCGTCG-CCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTG 148306 || | || ||||| ||| ||||| || || | || || | ||||||||||||||| | Sbjct 266536 GGCAGCGTCAATGTC-TCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCG 266478 Query 148307 GTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAAC 148366 | || ||||| |||| ||||||||| || || || || || || ||| ||| Sbjct 266477 GCCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAAC 266418 Query 148367 CAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGG 148405 | ||| | ||||| |||||| |||||| ||||| Sbjct 266417 CGAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGG 266379 >seq619 Length=304156 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || ||| || |||||| |||||||| || | | Sbjct 191783 GACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCA 191724 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||||| |||||||||||||| ||| ||| |||| Sbjct 191723 AAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGAATCTTTGCCTTCACG 191664 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | |||||||| || | || | || || ||||| |||||||| Sbjct 191663 TTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTTCCCAGTGAGAGTTTTC 191604 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 191603 ACGAAAATCTGCAT 191590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476503336927800