Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq318 102 3e-18 seq1167 100 9e-18 seq1654 98.7 3e-17 seq612 98.7 3e-17 seq608 98.7 3e-17 seq37 98.7 3e-17 seq175 91.5 5e-15 >seq318 Length=399903 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 24535 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 24476 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 24475 TCCCGGGTTTCGGC 24462 >seq1167 Length=199563 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 153288 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 153229 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 153228 CCCGGGTTTCGGC 153216 >seq1654 Length=148896 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 72975 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 73034 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 73035 CCGGGTTTCGGC 73046 >seq612 Length=305506 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 299626 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 299567 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 299566 CCGGGTTTCGGC 299555 >seq608 Length=305984 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 5711 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 5770 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 5771 CCGGGTTTCGGC 5782 >seq37 Length=764969 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 194331 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 194272 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 194271 CCGGGTTTCGGC 194260 >seq175 Length=494707 Score = 91.5 bits (100), Expect = 5e-15 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || || ||| |||||||| ||||||||| | ||||||||||||| ||||||||||||||| Sbjct 337101 ATCGCCGAAATAGCTCAGCTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCA 337160 Query 2826 ACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 337161 ATCCCGGGTTTCGGC 337175 Score = 86.0 bits (94), Expect = 2e-13 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || || ||| || ||||| ||||||||| | ||||||||||||| ||||||||||||||| Sbjct 332933 ATCGCCGAAATACCTCAGCTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCA 332992 Query 2826 ACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 332993 ATCCCGGGTTTCGGC 333007 Score = 78.8 bits (86), Expect = 3e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||| ||||||||| | ||||||||||||| ||||| |||||||||| | Sbjct 332622 GCCGAAATAGCTCAGCTGGGAGAGCGTCAGACTGAAGATCTGAAGGTTCCTGGTTCAATC 332681 Query 2829 CCGGGCTT 2836 || || || Sbjct 332682 CCAGGTTT 332689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15846461407725