Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq406 145 8e-30 seq619 132 5e-26 seq1594 95.1 1e-14 >seq406 Length=364117 Score = 145 bits (160), Expect = 8e-30 Identities = 899/1427 (63%), Gaps = 26/1427 (2%) Strand=Plus/Plus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583 |||| || |||| |||||||| || || || || || |||||||| || | || Sbjct 266440 CTACCTGCTGAAGATCAACGGGAAAGTGGCCGAGCGGCCGCAGCACATGCTCATGAGGGT 266499 Query 7584 GGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTC 7643 | |||| || || ||||| |||||||||||| ||| | || || ||| | | |||| Sbjct 266500 GTCGGTTGGGATCCACGGGCGAGACATTGACGCTGCCATCGAGACCTACAACCTCCTGTC 266559 Query 7644 TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCA 7703 ||| ||| || ||||| || || ||| | || ||| || || ||| ||| || Sbjct 266560 GGAGAAGTGGTTCACCCACGCCTCTCCGACCCTCTTCAACGCCGGGACCAACCGGCCGCA 266619 Query 7704 ATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACAC 7763 ||||| || || |||| ||||| || ||||||||||| ||||| ||| |||| Sbjct 266620 GCTGTCCAGCTGCTTCCTGCTTGCCATGAAGGACGACAGCATCGAAGGCATCTACGACAC 266679 Query 7764 GCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGA 7823 ||| | ||||| |||||||| | || || || || || || || | | Sbjct 266680 CCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCTGGGGGGATCGGCGTGGCGGTGAGCTG 266739 Query 7824 CGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCC 7883 | | || | | || ||| ||| | ||||||||| || ||| ||| || | || Sbjct 266740 CATCCGATCGACGGGAAGCTACATTGCCGGCACCAACGGCAACTCCAACGGATTGGTCCC 266799 Query 7884 CATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAA 7940 ||| || | || | ||| ||| ||| || | || |||||||| || ||| | Sbjct 266800 GATGCTGAGAGTTTACAACAACACGGCTCGCTACGTCGACCAGGGCGGCAACAAGAGACC 266859 Query 7941 AGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCT 8000 || ||| |||||| || |||| ||||||||| ||| | | || | || | || Sbjct 266860 CGGGGCCTTTGCCATGTACCTGGAACCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCT 266919 Query 8001 GCGTCGCAACATGGGTTGCGAAGA-CAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGG 8059 | |||| || || || ||| | ||| | || || |||| || |||||| Sbjct 266920 GAAGAAGAACACAGGAAAGGAGGAGCAG-AGAGCCAGAGACCTTTTCTACGCCTTGTGGA 266978 Query 8060 TGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCG 8119 | || || ||||| |||| | | || | | || | ||||| | ||||| ||| Sbjct 266979 TCCCGGACCTGTTCATGAAGAGAGTGGAAAGCAACCAGGACTGGTCCTTGATGTGTCCC- 267037 Query 8120 ATCG-TTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAA 8178 | || || ||| | | | | || | || || | | |||| | Sbjct 267038 AGCGAGTGTCCTGGGCTGGACGAGTGCTGGGGAGAGGAGTTCGAGAAGCTCTACACCAGA 267097 Query 8179 TACGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGCGC-GC-GACCTGCACCGCGCCA 8236 || || | || || | | || ||||| |||| || | ||| ||| || Sbjct 267098 TATGAGAAGGAAGGGAGGGTGAAGAGGGTGGTGAAGGCGCAGCAGCTCTGGTACGC--CA 267155 Query 8237 TTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACG 8296 | ||||| | || | ||||||||| | ||| |||||||| ||||| |||||||||||| Sbjct 267156 TCATCGAGTCCCAGACCGAAACCGGGACGCCCTACATGCTCTACAAGGACGCTTGCAACA 267215 Query 8297 CCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTG 8356 || ||||| || ||| |||||||||| |||||||| || ||| | || | | Sbjct 267216 GGAAGAGCAACCAGCAGAACCTGGGCACCATCAAATGCAGCAACCTCTGCACAGAGGTGG 267275 Query 8357 TACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACG 8416 | |||||| | ||||| |||||||| ||||| || || || | | ||| Sbjct 267276 TGGAGTACACCAGCAAGGACGAGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACA 267335 Query 8417 CGTTCGTTGATCGACGCTCAAAC--ACTTACGACTTTGAACAATTGAAAAACGCCGT--G 8472 || ||| |||| | | |||| |||| || || || | | |||| Sbjct 267336 TGTACGT-----CACGCCAGAGCGGACTTTCGAC-TTCAAGAA--GCTGGCCTCCGTCAC 267387 Query 8473 CAA-GTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGA 8531 ||| || | || || | | ||||| || |||||| || || | || Sbjct 267388 CAAGGTAATCGTGAAAAACCTCAACAAGATCATCGACATCAATTACTACCCGGTCCCCGA 267447 Query 8532 AGCGCGCG-TATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCG 8590 ||| || | || |||| ||||||||| || | || | ||||| || |||||||||| Sbjct 267448 AGC-CGAGACGTCCAACAAGCGCCACAGGCCGATCGGGATCGGCGTCCAGGGTCTGGCCG 267506 Query 8591 ACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAA 8650 | || || | || |||| | || | |||||||| ||||| | |||||||||| Sbjct 267507 ATGCCTTCATCCTGATGCGACATCCGTTCGAAAGCCCCGAAGCCCAGCTGCTCAACATCC 267566 Query 8651 AAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAAT 8710 | || || || | || ||| ||| | || |||||||| |||| ||| ||| Sbjct 267567 AGATCTTCGAGACCATCTACCACGCCGCCCTGGAGGCCAGCTGCGAACTCGCCGCAGAGC 267626 Query 8711 TGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACA 8770 | ||| | ||||| |||||| |||| || |||| || || | || ||||||| Sbjct 267627 TCGGCCCCTACGAGACGTACGAGGGCTCGCCCATCAGCAAGGGCATCCTCCAGTACGACA 267686 Query 8771 TGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTC 8830 ||||| | || || ||| ||||| | |||| |||| || || || Sbjct 267687 TGTGGGAGAAGACACCGACCGACCTGTGGGACTGGAAGCTGCTGAAGGAGAAGATCGCCA 267746 Query 8831 AATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAA 8890 || ||| || | || ||| || |||| ||||||||| || | || || || | Sbjct 267747 AACACGGCGTGAGGAACAGCCTGCTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGA 267806 Query 8891 TAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 | |||| |||||||| ||| | ||| ||| ||||| |||| | ||| Sbjct 267807 TCCTGGGCAACAACGAGTCCATCGAGGCGTACACCAGCAACATCTAC 267853 >seq619 Length=304156 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 |||||| || || || | ||| ||||| || ||||| ||||| || ||||||||||| Sbjct 191817 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 191758 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | |||| | || || ||||||||||| ||||| |||| | |||||| || || || Sbjct 191757 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGG 191698 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||||||||| || ||||| ||| || || || | ||||| | ||||| Sbjct 191697 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCAC 191638 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || |||||||| || || || | |||||| |||||||| ||||| || Sbjct 191637 CTCCAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCATCTT 191587 >seq1594 Length=294527 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | || ||||| || ||||| ||||| || ||||||||||| Sbjct 184032 CCACCCCTGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 184091 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 184092 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 184151 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | |||||| | || || Sbjct 184152 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACC 184211 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| | || || ||||| || ||||| Sbjct 184212 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 184258 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | || ||||| || |||||||| || || ||||||||||| Sbjct 188224 CCACCCCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGAC 188283 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| || || ||||| |||| | |||||| || || || Sbjct 188284 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 188343 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || || | ||||| | ||||| Sbjct 188344 ATGCCCTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACC 188403 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || |||||||| ||||| | ||||| || || || ||||| ||| Sbjct 188404 TCAAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTTG 188454 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | || ||||| || ||||| ||||| || ||||||||||| Sbjct 187996 CCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 188055 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| || || ||||| |||| | |||||| || || || Sbjct 188056 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 188115 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || ||||| ||||| || | ||||| | || || Sbjct 188116 ATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACC 188175 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||| ||||| | || || ||||| || ||||| Sbjct 188176 TCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 188222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505284022024600