Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq406 383 2e-101 seq541 98.7 1e-15 >seq406 Length=364117 Score = 383 bits (424), Expect = 2e-101 Identities = 1270/1959 (65%), Gaps = 37/1959 (2%) Strand=Plus/Minus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| || ||||||| | |||||| | | | ||||| || || || Sbjct 267948 TTCTTCATCTCCTCGTTCCACAGGCCACGCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTG 267889 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || || || || || || | ||| || || ||||| || || ||||| || | || Sbjct 267888 ACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCG 267829 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | || || || || ||||| || || || || || || || ||||| || |||| || Sbjct 267828 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGC 267769 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | || || || | || ||| | ||| || || || || | ||||| ||||| || Sbjct 267768 AGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 267709 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATG----A 68948 || | ||| | ||| | ||||| || || || || ||||| ||| | Sbjct 267708 TCGGTCGGTGTCTTCTCCCACATGTCGTACTGGAGGATGCC----CTTGCTGATGGGCGA 267653 Query 68949 TCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGC 69008 || | || || || || || || || | | || ||||| || || ||||| | || Sbjct 267652 GCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGTTCGCAGCTGGCCTCCAGGGC 267593 Query 69009 ACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAA 69068 ||| || || || ||||| |||| | ||||| || ||||| | || ||||| Sbjct 267592 GGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCTTCGGGGCTTTCGAA 267533 Query 69069 TGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCT 69128 |||| | | || || || ||||| |||| ||||| || || || ||||| || || Sbjct 267532 CGGATGTCGCATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGCCT 267473 Query 69129 ATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 69188 || | ||| || || | || ||||| || | || || ||||| || || || || || Sbjct 267472 GTGGCGCTTGTTGGACGTCTCGGCTTCGGGGACCGGGTAGTAATTGATGTCGATGATCTT 267413 Query 69189 ATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCC 69248 || || ||| || | ||| || ||| || || || || || |||| Sbjct 267412 GTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAA-GTCC 267354 Query 69249 A-TCTA---TAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCAT 69304 ||| | || |||| || || || | || || || || || || || ||||| | Sbjct 267353 GCTCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGT 267294 Query 69305 TAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGAT 69364 | | || | | | |||||| || || || || |||||||| || ||||| | Sbjct 267293 CCTTGCTGGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGT 267234 Query 69365 TTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTT 69424 | ||||| || ||||| |||| || ||||||||||| || || | || || || |||| Sbjct 267233 TCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTT 267174 Query 69425 CAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAAC 69484 | |||| || ||||| || | | ||| | | || || | || |||| || Sbjct 267173 CGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCTTCACCACCCTCTTC--AC 267116 Query 69485 GCTTC--TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATC 69542 || | || || |||||| || || ||| ||||| || |||||||| || || Sbjct 267115 CCTCCCTTCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTC 267056 Query 69543 CAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTA--ACTCGT 69600 || |||||||| || | ||||||||||| ||||| | | | | ||| |||| Sbjct 267055 CAGCCCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGT--TGCTTTCCACTCTC 266998 Query 69601 TTCATAAATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTC 69659 ||||| || || || || ||||| | || || ||| || ||||||| ||| | || || Sbjct 266997 TTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAA-AGGTCTCTGGCTCTCTGCTCCTC 266939 Query 69660 ATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAG 69719 |||||||| || || || || || || || || | | || | ||||| ||||| || Sbjct 266938 CTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGTTCCAG 266879 Query 69720 ATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTT 69779 || || || | | | || |||| || || || ||||| || | ||| | || ||||| Sbjct 266878 GTACATGGCAAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAGCGAGCCGTGTT 266819 Query 69780 ATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATA 69839 || || |||||||||||||| | | || || || || || || || || | ||| || Sbjct 266818 GTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCAATGTA 266759 Query 69840 ACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGAT 69899 ||||| | | || || || | | | || || || || || || || || Sbjct 266758 GCTTCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCCCCAGCGGACTTGGAAAT 266699 Query 69900 TAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAG 69959 || || || | |||| ||||| || || || || ||||| || || ||||| ||| Sbjct 266698 GAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCAAG 266639 Query 69960 AAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGC 70019 || || ||||| |||| || | | | || || || || || | || ||||| || Sbjct 266638 CAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGC 266579 Query 70020 GTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCA 70079 ||| |||||||| || || || || || ||||| || || || || | || || || | Sbjct 266578 GTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCAGCGTCAATGTCTCG 266519 Query 70080 CTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATT 70139 | || || || | || || | ||| | ||| ||||| || || || || ||| Sbjct 266518 CCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCC 266459 Query 70140 ATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAA 70199 || || |||| |||||| || |||||||| || || || || ||||||| || || Sbjct 266458 GTTGATCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAACCGAAGAAGTTGTAGGAGAA 266399 Query 70200 GTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATC--- 70256 ||||| |||||||| || ||||| || ||||| | || | || || || Sbjct 266398 ATCTCTGTCGTAAATGATGGAGGAATTGAGGCGGTCCTTGTTTTCCATGACGATGTCGAG 266339 Query 70257 CATAACAGTAGGTGAGATAATCGGAGA---TCGTTTACCATTTTTAGGATTAACATAGTT 70313 | | | | ||||| || ||||| ||||| || ||| || || ||| Sbjct 266338 CGTCTCCTT---GGAGATCATGGGAGAGTGGCGTTT---GTTCAGAGGGTTGACGTAGGC 266285 Query 70314 GAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATAT 70373 ||| | |||||||| || || || || | || || || |||||||| | || || | Sbjct 266284 GAACAGGTCTTCCATCACCTCGCTGAACACCTTCTTGGTCTCCTTGTGCAGGTTGGAGAC 266225 Query 70374 GGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTAT 70433 ||| || || || || || || || ||||| || |||| || || || || || || Sbjct 266224 GGCAATCCTCGCGGCCAGGATGGCGTAGTCGGGGTGTTTGGTCGTCAGGGTGGCCGCGAT 266165 Query 70434 TTCCGCAGCTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAAC 70493 ||||| |||| ||| || | || | || || || ||| | || | || || || || Sbjct 266164 CTCCGCCGCTAGCGTGTCAAGCTCCACGGTGGTGACGCCGCTGTACAAGCCCTGGATCAC 266105 Query 70494 TTTCATGGCTATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCT 70553 ||||||| || | ||||| | || || | |||||| || || || || |||| Sbjct 266104 CTTCATGGTGATCTGAGCTGGATCCACAAAGTCCGGGTTCAGGCCGTAGCA-AAGCTTCT 266046 Query 70554 -AATACGAGATGTAATTTTATCAAACATAACATTCTCCT 70591 || || || || |||||||| ||||| || ||||| Sbjct 266045 GGATGCGGGAGGTGATTTTATCGAACATGACGCGCTCCT 266007 >seq541 Length=321934 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 |||||||| || ||||| || | ||||| || |||||||||||||| || |||| || Sbjct 160858 ATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTCTTCCTG 160917 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || |||||||||||||| || || |||| ||||| || || |||| || ||||| || Sbjct 160918 TTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGCGACTCGATGAT 160976 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || || || || | |||||||| |||||||||||||| || || |||||||| ||| Sbjct 162375 GTGCCGGCGTTGAACAGGGTAGGAGAGGCGTGAGTGAACCACTTCTCTGAAAGCAGGTTG 162434 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 |||||||||| ||||| || || || | ||||| || | || || | ||||| | Sbjct 162435 TATGTTTCAACAGCTGCATCAATGTCTTCTTTGTGAATCCCGACTGCCACTCTCATCAGC 162494 Query 70111 ATATGCTGAGGTC 70123 || ||||| |||| Sbjct 162495 ATGTGCTGGGGTC 162507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686753343952200