Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq406 111 1e-19 seq1594 98.7 8e-16 seq541 82.4 6e-11 >seq406 Length=364117 Score = 111 bits (122), Expect = 1e-19 Identities = 262/395 (66%), Gaps = 3/395 (1%) Strand=Plus/Minus Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662 ||||| |||||||||||||| | ||||| | ||| ||| |||| |||||| ||| Sbjct 267048 GGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTTTCCACTCTCTTCATGAAC 266989 Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722 | ||||| | ||| || ||||| || || ||||| ||| | | ||| || | || | Sbjct 266988 AGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG 266929 Query 131723 AtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCC 131782 | || |||| | | ||||| || | ||| ||||| ||||||| |||| || Sbjct 266928 TTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCA 266869 Query 131783 ATTGCGCC---TTTGCGCTTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACG 131839 | || || | | || ||||| || | || | ||| || |||||||||| || Sbjct 266868 AAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACT 266809 Query 131840 CGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTG 131899 | || ||| || |||| ||||||| ||| || ||||||| ||||||||| || | Sbjct 266808 CTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCAATGTAGCTTCCCGTC 266749 Query 131900 GCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCAT 131959 | || ||| | || | || || || || || | || || || || ||||| Sbjct 266748 GATCGGATGCAGCTCACCGCCACGCCGATCCCCCCAGCGGACTTGGAAATGAGCGCGCAC 266689 Query 131960 TTGGTTAGAGTGTTATAGATACCTTCCACGCTGTC 131994 | | || |||| ||||| ||||| | |||||| Sbjct 266688 TGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTC 266654 >seq1594 Length=294527 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || |||||||| ||||||||||| || | |||| | ||||| ||||| || ||| Sbjct 184290 GTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 184349 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| || || || || | ||||| ||||| ||| ||| ||| Sbjct 184350 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTG 184409 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| ||| ||| || || || || || | |||||| || || || Sbjct 184410 ACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTC 184469 Query 27231 TTCACAAAGATTTGCAT 27247 || |||||||| ||||| Sbjct 184470 TTGACAAAGATCTGCAT 184486 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || |||||||| || | |||| | ||||| ||||| || ||| Sbjct 188254 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 188313 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| || || || || | ||||| ||||| ||||||| || Sbjct 188314 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTA 188373 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| ||| || || || || || || | |||||| || || ||| Sbjct 188374 ACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTGCCGGTGAGGGTT 188433 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 188434 TTCACAAAGATCTGCAT 188450 >seq541 Length=321934 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131644 TTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTT 131703 ||| |||||||||||||| | || || | ||| || || | ||||| ||||| ||| | Sbjct 161305 TTCCACTCGCTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTGGCTCT 161364 Query 131704 TTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCA 131763 | ||||||| ||||| | | || |||| | ||||| || || | ||| |||||||| Sbjct 161365 CTGCTCTTCTTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCATGCCA 161424 Query 131764 GGGTTCCAAATACAC 131778 || |||| ||||| Sbjct 161425 CGGCTCCAGGTACAC 161439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424840636232760