Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq406 163 4e-35 seq541 91.5 2e-13 seq768 89.7 6e-13 seq120 84.2 3e-11 >seq406 Length=364117 Score = 163 bits (180), Expect = 4e-35 Identities = 950/1495 (64%), Gaps = 50/1495 (3%) Strand=Plus/Minus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || ||| || | | ||||| |||| |||||| |||||| Sbjct 267946 CTTCATCTCCTCGTTCCACAGGCCACGCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGAC 267887 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || ||||| || | || || | ||||||||| | ||||| | || | Sbjct 267886 GATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGAT 267827 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| || |||||||| || || ||||| || |||| || || Sbjct 267826 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAG 267767 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 110852 ||||| | | || | | ||| ||||| || | | |||||| | | Sbjct 267766 GCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 267707 Query 110853 GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCAC-CCCTTGG-GACGCGGGAGAACC 110910 | | ||| || || |||||||||| |||| || | |||||| || | | ||| || Sbjct 267706 GGTCGGTGTCTTCT-CCCACATGTCGTACTGGAGGATGCCCTTGCTGATGGGCGAG--CC 267650 Query 110911 CTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 110970 ||| | || || |||| || | || | || | ||| ||||| |||||||||| || Sbjct 267649 CTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGTTCGCAGCTGGCCTCCAGGGCGGC 267590 Query 110971 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 111030 ||| || ||||| || ||||| | || | | || |||||| || || | Sbjct 267589 GTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCTTCGGGGCTTTCGAACGG 267530 Query 111031 GTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 111090 | || || || || |||| || ||||| || || || | || || || ||||| Sbjct 267529 ATGTCGCATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTG 267470 Query 111091 TCGCATATTAGACTTTCGCGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGT 111149 ||| | || ||| | | || || || || || |||| |||| |||| || Sbjct 267469 GCGCTTGTTGGACGT-CTCGGCTTCGGGGACCGGGTAGTAATTGATGTCGATGATCTTGT 267411 Query 111150 TTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAG 111209 | || ||||| | | ||| |||| || || | | || ||||| || Sbjct 267410 TGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCG-- 267353 Query 111210 TCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCAT 111269 |||| |||| ||| | |||||||| || |||| ||||| || ||| ||| | Sbjct 267352 -CTCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGT 267294 Query 111270 CCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAAT 111329 |||| |||||||| | | ||||| || | |||| | || || || |||| | Sbjct 267293 CCTTGCTGGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGT 267234 Query 111330 TCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 111389 ||| ||||| |||||| ||||||| || |||||||||||||||||||||||||| || | Sbjct 267233 TCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTT 267174 Query 111390 CCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCC 111448 | ||||| || | || || || | ||| | | | ||| || || | || || Sbjct 267173 CGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCT-TCACCACCCTCTTCACC 267115 Query 111449 CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGA 111507 | || ||| ||| || | |||||||| || |||||||| ||| | || ||| Sbjct 267114 CTCCCTTCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCC-CAGCACTCGTC 267056 Query 111508 GAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCC--TCAACCCGC 111565 || || || || | ||||| | | ||||| | || || | || || | | Sbjct 267055 CAGCCCAGGACACTCGCTGGGACACATCAAGGACCA--GTCCTGGTTGCTTTCCACTCTC 266998 Query 111566 TTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCG 111625 |||||||| ||||| || ||||||| || | || || ||||| | ||| || Sbjct 266997 TTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCC 266938 Query 111626 TCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAG 111684 | ||| ||| || | | ||| ||||| || | | || |||||| || || || Sbjct 266937 TTTCCTGTGTT-CTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGTTCCAG 266879 Query 111685 ATAGACTGCGA------TAGATCCCTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTG 111737 || | || | | || ||| | | ||||| || | || ||||| || | Sbjct 266878 GTACATGGCAAAGGCCCCGGGTCTCTTGTTGCCGCCC----TGGTCGACGTAGCGAGCCG 266823 Query 111738 TGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA 111797 || ||| | || | ||||| || | | || | || | || || || || || Sbjct 266822 TGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCAA 266763 Query 111798 TACGAGATT------TATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCC 111851 | || || || || | || ||| | || || || |||||||| Sbjct 266762 T-GTAGCTTCCCGTCGATCGGAT-GCAGCTCACCG----CCACGCCGATCCCCCCAGCGG 266709 Query 111852 ACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCT 111911 |||| || || |||| |||| | | || || | ||||| || | ||| ||| |||| Sbjct 266708 ACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCT 266649 Query 111912 TGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TTGGTGTACCAGCATTGAAGAG 111969 | |||| | |||||||| ||||||| |||||| | ||| || || || |||||||| Sbjct 266648 TCATGGCAAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTG--GTCCCGGCGTTGAAGAG 266591 Query 111970 GGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAG 112028 ||| || | ||||| ||||| || | | |||| || ||| ||||| | | ||| Sbjct 266590 GGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCAG 266532 Query 112029 AATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 ||||||||| ||||||||| || | | |||| ||||| ||||| ||| || Sbjct 266531 CGTCAATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGG 266477 >seq541 Length=321934 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || |||||| || | || ||||| || | ||| ||| || || || Sbjct 160833 CTCATCTCTACTTGTGTATTCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCC 160892 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || ||| | ||||| ||||| ||||||| || ||||||||||||||||| ||||| || Sbjct 160893 CAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACC 160952 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 |||||| ||||| || | || || || | ||| Sbjct 160953 CGTCTCTGTCTGCGACTCGATGATGGCGTACCA 160985 >seq768 Length=308456 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || ||||||||||||||||||||||||||||||||||| || || |||||| ||||| Sbjct 128822 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTCCAGAGAAATGTTCTCCATG 128763 Query 122431 AAGTCAAATGGATTCTTCG 122449 ||||| || || |||| || Sbjct 128762 AAGTCGAACGGGTTCTCCG 128744 >seq120 Length=551038 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 |||| || | | ||| ||||| || ||| || || ||||||||||| || | ||||| Sbjct 520407 CCTCGTCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 520348 Query 122738 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 ||| ||| || ||||| |||||| || ||||||||||| |||||||| Sbjct 520347 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAGATCCCCTCCAC 520299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627889868508000