Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq406 163 4e-35
seq541 91.5 2e-13
seq768 89.7 6e-13
seq120 84.2 3e-11
>seq406
Length=364117
Score = 163 bits (180), Expect = 4e-35
Identities = 950/1495 (64%), Gaps = 50/1495 (3%)
Strand=Plus/Minus
Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673
|||||| |||| | ||| || ||| || | | ||||| |||| |||||| ||||||
Sbjct 267946 CTTCATCTCCTCGTTCCACAGGCCACGCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGAC 267887
Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733
|| ||||| || | || || | ||||||||| | ||||| | || |
Sbjct 267886 GATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGAT 267827
Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793
| | || || || |||| ||| || |||||||| || || ||||| || |||| || ||
Sbjct 267826 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAG 267767
Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 110852
||||| | | || | | ||| ||||| || | | |||||| | |
Sbjct 267766 GCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 267707
Query 110853 GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCAC-CCCTTGG-GACGCGGGAGAACC 110910
| | ||| || || |||||||||| |||| || | |||||| || | | ||| ||
Sbjct 267706 GGTCGGTGTCTTCT-CCCACATGTCGTACTGGAGGATGCCCTTGCTGATGGGCGAG--CC 267650
Query 110911 CTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 110970
||| | || || |||| || | || | || | ||| ||||| |||||||||| ||
Sbjct 267649 CTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGTTCGCAGCTGGCCTCCAGGGCGGC 267590
Query 110971 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 111030
||| || ||||| || ||||| | || | | || |||||| || || |
Sbjct 267589 GTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCTTCGGGGCTTTCGAACGG 267530
Query 111031 GTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 111090
| || || || || |||| || ||||| || || || | || || || |||||
Sbjct 267529 ATGTCGCATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTG 267470
Query 111091 TCGCATATTAGACTTTCGCGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGT 111149
||| | || ||| | | || || || || || |||| |||| |||| ||
Sbjct 267469 GCGCTTGTTGGACGT-CTCGGCTTCGGGGACCGGGTAGTAATTGATGTCGATGATCTTGT 267411
Query 111150 TTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAG 111209
| || ||||| | | ||| |||| || || | | || ||||| ||
Sbjct 267410 TGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCG-- 267353
Query 111210 TCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCAT 111269
|||| |||| ||| | |||||||| || |||| ||||| || ||| ||| |
Sbjct 267352 -CTCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGT 267294
Query 111270 CCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAAT 111329
|||| |||||||| | | ||||| || | |||| | || || || |||| |
Sbjct 267293 CCTTGCTGGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGT 267234
Query 111330 TCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 111389
||| ||||| |||||| ||||||| || |||||||||||||||||||||||||| || |
Sbjct 267233 TCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTT 267174
Query 111390 CCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCC 111448
| ||||| || | || || || | ||| | | | ||| || || | || ||
Sbjct 267173 CGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCT-TCACCACCCTCTTCACC 267115
Query 111449 CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGA 111507
| || ||| ||| || | |||||||| || |||||||| ||| | || |||
Sbjct 267114 CTCCCTTCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCC-CAGCACTCGTC 267056
Query 111508 GAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCC--TCAACCCGC 111565
|| || || || | ||||| | | ||||| | || || | || || | |
Sbjct 267055 CAGCCCAGGACACTCGCTGGGACACATCAAGGACCA--GTCCTGGTTGCTTTCCACTCTC 266998
Query 111566 TTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCG 111625
|||||||| ||||| || ||||||| || | || || ||||| | ||| ||
Sbjct 266997 TTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCC 266938
Query 111626 TCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAG 111684
| ||| ||| || | | ||| ||||| || | | || |||||| || || ||
Sbjct 266937 TTTCCTGTGTT-CTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGTTCCAG 266879
Query 111685 ATAGACTGCGA------TAGATCCCTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTG 111737
|| | || | | || ||| | | ||||| || | || ||||| || |
Sbjct 266878 GTACATGGCAAAGGCCCCGGGTCTCTTGTTGCCGCCC----TGGTCGACGTAGCGAGCCG 266823
Query 111738 TGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA 111797
|| ||| | || | ||||| || | | || | || | || || || || ||
Sbjct 266822 TGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCAA 266763
Query 111798 TACGAGATT------TATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCC 111851
| || || || || | || ||| | || || || ||||||||
Sbjct 266762 T-GTAGCTTCCCGTCGATCGGAT-GCAGCTCACCG----CCACGCCGATCCCCCCAGCGG 266709
Query 111852 ACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCT 111911
|||| || || |||| |||| | | || || | ||||| || | ||| ||| ||||
Sbjct 266708 ACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCT 266649
Query 111912 TGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TTGGTGTACCAGCATTGAAGAG 111969
| |||| | |||||||| ||||||| |||||| | ||| || || || ||||||||
Sbjct 266648 TCATGGCAAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTG--GTCCCGGCGTTGAAGAG 266591
Query 111970 GGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAG 112028
||| || | ||||| ||||| || | | |||| || ||| ||||| | | |||
Sbjct 266590 GGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCAG 266532
Query 112029 AATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083
||||||||| ||||||||| || | | |||| ||||| ||||| ||| ||
Sbjct 266531 CGTCAATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGG 266477
>seq541
Length=321934
Score = 91.5 bits (100), Expect = 2e-13
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324
|||||| || |||||| || | || ||||| || | ||| ||| || || ||
Sbjct 160833 CTCATCTCTACTTGTGTATTCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCC 160892
Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384
|| ||| | ||||| ||||| ||||||| || ||||||||||||||||| ||||| ||
Sbjct 160893 CAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACC 160952
Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417
|||||| ||||| || | || || || | |||
Sbjct 160953 CGTCTCTGTCTGCGACTCGATGATGGCGTACCA 160985
>seq768
Length=308456
Score = 89.7 bits (98), Expect = 6e-13
Identities = 67/79 (85%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430
|| ||||||||||||||||||||||||||||||||||| || || |||||| |||||
Sbjct 128822 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTCCAGAGAAATGTTCTCCATG 128763
Query 122431 AAGTCAAATGGATTCTTCG 122449
||||| || || |||| ||
Sbjct 128762 AAGTCGAACGGGTTCTCCG 128744
>seq120
Length=551038
Score = 84.2 bits (92), Expect = 3e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737
|||| || | | ||| ||||| || ||| || || ||||||||||| || | |||||
Sbjct 520407 CCTCGTCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 520348
Query 122738 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786
||| ||| || ||||| |||||| || ||||||||||| ||||||||
Sbjct 520347 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAGATCCCCTCCAC 520299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627889868508000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |