Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq406 102 1e-16 seq768 89.7 6e-13 seq120 82.4 9e-11 >seq406 Length=364117 Score = 102 bits (112), Expect = 1e-16 Identities = 937/1497 (63%), Gaps = 54/1497 (4%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||| | ||| | | || || || ||| ||||||||| ||| | Sbjct 266477 CCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGAGACATTGACGCTGCC 266536 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || |||| | | || ||||| ||||| | || |||||||| Sbjct 266537 ATCGAGACCTACAACCTCCTGTCGGAGAAGTG-GTTCACCCACGCCTCTCCGACCCTCTT 266595 Query 104341 CAATGCTGGTAC--ACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||| || || || ||| | || || ||||||| |||||||| | |||| ||||| Sbjct 266596 CAACGCCGGGACCAACC--GGCCGCAGCTGTCCAGCTGCTTCCTGCTTGCCATGAAGGAC 266653 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| ||| | || ||||| | || || | | |||| |||| || || |||| ||| Sbjct 266654 GACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCT 266713 Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAAT------AAATCTCGTATTCGG 104512 ||||| || || || | ||| || | || || || || ||| Sbjct 266714 GGGGGGATCGGCGTG----GCGGTGAGCTG-CATCCGATCGACGGGAAGCT-ACATTGCC 266767 Query 104513 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 104572 || || || || | || | || | | || ||||| | || | ||| ||| || Sbjct 266768 GGCACCAACGGCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACAACAACACGGCT 266827 Query 104573 CGCTATGTAAATCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTATCTTGA 104625 ||||| | || | | ||||| | | ||| || | | || | || || || Sbjct 266828 CGCTACG----TCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTTGCCATGTACCTGGA 266883 Query 104626 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGA 104685 || |||||| || | | || ||||| ||| || ||| ||| | ||||| Sbjct 266884 ACCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGA 266943 Query 104686 GGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 104745 | | | | | || || |||| ||| | ||||| || || || |||||||||||||| Sbjct 266944 GCAGAGAGCCAGAGACCTTTTCTACGCCTTGTGGATCCCGGACCTGTTCATGAAGAGAGT 267003 Query 104746 TG--AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA- 104802 | || | || | ||||| | | ||||| | || ||||| || ||| Sbjct 267004 GGAAAGCAACCAGG--ACTGGTCCTTGATGTGTCCCAGCGAGTGTCCTGGGCTGGACGAG 267061 Query 104803 TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGAC 104862 ||| | ||| |||||||| || || ||||| | || ||| | ||||| ||| || Sbjct 267062 TGCTG-GGGAGAGGAGTTCGAGAAGCTCTACACCAGATATGAGAAGGAAGGGAGGGTGAA 267120 Query 104863 TGCGACGGTGCCAGCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 104921 | |||| || || | | | ||| | || || || |||| || ||||| || | Sbjct 267121 GAGGGTGGTG-AAGGCGCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAAACCG 267179 Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 104981 | || || |||||||| ||||| ||||| || ||| ||||| || || |||| ||| Sbjct 267180 GGACGCCCTACATGCTCTACAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAACCTGG 267239 Query 104982 GTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGA 105041 | ||||| | ||| ||||| ||||| | |||| | || ||| || ||| Sbjct 267240 GCACCATCAAATGCAGCAACCTCTGCACAGAGGTGGTGGAGTACACCAGCAAGGACGAGG 267299 Query 105042 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA 105101 ||| || || ||||| || || ||||| ||| || ||| || |||||| || Sbjct 267300 TGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCAGAG---CGGA 267356 Query 105102 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAG 105161 | || || | | || || | || || || || |||||||| |||| Sbjct 267357 CTTTCGACTTCAAGAAGCTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCTCAACAAGA 267416 Query 105162 TTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTC 105221 | || || | |||| ||||| || || | || || | | | ||| | | Sbjct 267417 TCATCGACATCAATTACTACCCGGTCCCCGAAGCCGAGACGTCCAACAAGCGCCACAGGC 267476 Query 105222 CAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTG 105281 | || || |||| || |||||||| || |||| ||||| || || || | || | Sbjct 267477 CGATCGGGATCGGCGTCCAGGGTCTGGCCGATGCCTTCATCCTGATGCGACATCCGTTCG 267536 Query 105282 ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTC 105341 | | |||||| || |||| | || || |||||||| || |||||||| | Sbjct 267537 AAAGCCCCGAAGCCCAGCTGCTCAACATCCAGATCTTCGAGACCATCTACCACGCCGCCC 267596 Query 105342 TTGAGGCGAGTTCAGAGTT---GGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 105398 | ||||| || | || | |||||| | || || || || || | ||||| | Sbjct 267597 TGGAGGCCAGCTGCGAACTCGCCGCAGAGCT---CGGCCCCTACGAGACGTACGAGGGCT 267653 Query 105399 CTCCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTC 105455 | || | ||| |||||| | || || | || ||||||| || || ||| | | | Sbjct 267654 CGCC--CATCAGCAAGGGCATCCTCCAGTACGACATGTGGG-AGAAGACACCGACCGACC 267710 Query 105456 ACTACGACTGGGAAGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTC 105514 | |||| ||||||| || ||||| ||| | | || | | ||||| || Sbjct 267711 TGTGGGACT-GGAAGCTGCTGAAGGAGAAGATCGCCAAACACGGCGTGAGGAACAGCCTG 267769 Query 105515 CTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 105574 || |||| || ||||| || || |||||||| || ||| |||| || || || | | | Sbjct 267770 CTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATC 267829 Query 105575 GAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTC 105634 || | ||||| | |||||||| | || || | |||||||| ||| ||| Sbjct 267830 GAGGCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCGGAGAGTTCCAGATCGTC 267889 Query 105635 AACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691 ||| || ||| | | ||||| | ||| ||| || ||| | |||| |||||| Sbjct 267890 AACCCTCACCTCCTCAAGGACCTGACGGAGCGTGGCCTGTGGAACGAGGAGATGAAG 267946 >seq768 Length=308456 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| ||||||||||||||||| ||| ||| || | ||||| |||||| |||| Sbjct 127855 GTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCCATCTTCTGGCTGAAGAAGAGAGGC 127914 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936 || ||||| || || |||| ||||||||| ||| ||| ||||||| Sbjct 127915 CTGATGCCTGGCCTGACCTTCAGCAACGAGCTCATCAGTCGAGACGAGG 127963 >seq120 Length=551038 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| ||||||||||| || || ||| ||||| || ||||| |||||| |||| Sbjct 520299 GTGGAGGGGATCTTCTTCTCAGGCTCATTCGCTGCTATCTACTGGCTGAAGAAGAGAGGC 520358 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 ||||||||||| || || ||||||||| || || Sbjct 520359 CTCATGCCAGGCCTTACCTACTCCAACGAACTCAT 520393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583128800790200