Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq406 444 6e-120
seq120 104 3e-17
seq541 98.7 1e-15
seq768 95.1 1e-14
>seq406
Length=364117
Score = 444 bits (492), Expect = 6e-120
Identities = 986/1455 (68%), Gaps = 43/1455 (3%)
Strand=Plus/Minus
Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566
|||||| |||| ||| || ||| |||||||||| | ||||||| ||||| | |||
Sbjct 267880 GAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTC 267821
Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626
|||||| |||| |||||||||||| || || || |||||||| || | ||| || ||
Sbjct 267820 GTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTT 267761
Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAGG------CCGTCCCAAAATTCATTCGC 78680
|| | || || | ||||| |||| || | |||||| | || |||
Sbjct 267760 CCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGG 267701
Query 78681 CGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCG--GACGCCGGCGACCCCTTGAAC 78738
| || |||||||||| || ||||| |||| | || | ||||| |||| | ||
Sbjct 267700 TGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGATG--GGCGAGCCCTCGTAC 267643
Query 78739 GTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT---GACTCGAGCAGGGCCGCGTGG 78795
|||||||| | || ||| |||||||||||| | ||| |||||| ||||||
Sbjct 267642 GTCTCGTAGGGGCCGAGCTCTGCGGCGAGTTCGCAGCTGGCCTC---CAGGGCGGCGTGG 267586
Query 78796 TACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTT--GGTCTCGTCGAACGAAA 78853
|| | | ||||||||| |||||||| || | ||| || || ||||||| |
Sbjct 267585 TAGATGGTCTCGAAGATCTGGATGTTGAGCA-GCTGGGCTTCGGGGCTT-TCGAACGGAT 267528
Query 78854 GGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGC 78913
| | | || |||||| |||||||||| |||||||||||||| ||||||| | |||||
Sbjct 267527 GTCGCATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGC 267468
Query 78914 GCATGTTGCTCTT-TCGGGCCGCCTCGGT---CGGGTAAAAGTTCCGATCGATGACGCGG 78969
|| ||||| | | |||| | |||| |||||| | || ||||||| |
Sbjct 267467 GCTTGTTGGACGTCTCGG----CTTCGGGGACCGGGTAGTAATTGATGTCGATGATCTTG 267412
Query 78970 TTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAAT---GA 79026
|| ||||| | || ||| || || | || || ||| || ||| |
Sbjct 267411 TTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGC 267352
Query 79027 TTTCCTTTGATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCC 79086
| | ||| | | | ||| | || ||||||||||| |||||| |||||||
Sbjct 267351 TCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCC 267292
Query 79087 GGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTC 79146
||| | ||| | | |||||||| | || | ||||||||||| | ||||
Sbjct 267291 TTGCTGGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTC 267232
Query 79147 TTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCA 79206
| ||||||||||||| ||| || |||||||||||| |||||| ||||||||||| ||
Sbjct 267231 TGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCG 267172
Query 79207 ACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGA 79266
||| || || | | ||| ||||| | | | ||| || ||| |||| |||
Sbjct 267171 GTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCTTCACCACCCTCTT-CACCCT 267113
Query 79267 CCCTGTGCGACGTACGTCCG--GTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCA 79324
|||| | | | | || | ||| | || | ||| |||| || || ||| ||
Sbjct 267112 CCCT-TCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCA 267054
Query 79325 GGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCA 79384
| || || |||||| || ||||||| | |||||||| || | || || ||| ||
Sbjct 267053 GCCCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTTTCCACTCTCTTCA 266994
Query 79385 TGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGC 79444
|||| |||||||||||||||| ||| ||| ||||| | | | | |||||| | |
Sbjct 266993 TGAACAGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTC 266934
Query 79445 CCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGA 79504
| |||| |||||| || ||||| | | |||| ||||||||| ||||| || |
Sbjct 266933 CTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACA 266874
Query 79505 TGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGA 79564
|||| || | || | |||| ||||||||||| |||||| || ||||||||||||
Sbjct 266873 TGGCAAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGT 266814
Query 79565 AAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGAT-TCGTGTA 79623
|||||| ||||| || || | |||| || | |||||| || ||| || | | |
Sbjct 266813 AAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCAATGTAGCTTC 266754
Query 79624 CCGCTCGCCCGAATGTTCGAGCAGTG-GATTCCGATGCCCCCGGACCACTTGGAGATGTG 79682
||| ||| || ||| | || | | ||||| ||||| | ||||||| ||| |
Sbjct 266753 CCG-TCGATCGGATG-CAGCTCACCGCCACGCCGATCCCCCCAGCGGACTTGGAAATGAG 266696
Query 79683 CGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAG 79742
|||||||| ||| || || ||||||||||| ||||| |||||||||||| || | |||
Sbjct 266695 CGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCAAGCAG 266636
Query 79743 GAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTG 79802
||||||||| |||| ||| || ||| || |||||||||||||||||||| | |||||
Sbjct 266635 GAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTG 266576
Query 79803 CGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGAC-GCGCGGGAGGTCGTCG- 79860
||||| |||| | || || | ||| ||||| || | ||| | ||| |||
Sbjct 266575 GGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCAGCG-TCAATGTC-TCGC 266518
Query 79861 CCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGGCGTCTCGCCGACATTCAGG 79920
|||||||| || |||| || | ||||| | || ||| ||| |||| | || ||| |
Sbjct 266517 CCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCG 266458
Query 79921 TAGCCCTTCTGCAGG 79935
| | |||| |||||
Sbjct 266457 TTGATCTTCAGCAGG 266443
Score = 351 bits (388), Expect = 1e-91
Identities = 881/1325 (66%), Gaps = 29/1325 (2%)
Strand=Plus/Plus
Query 19165 CGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAA 19224
|||||| ||| |||| || |||||| ||||| ||||| | |||||||| |||||
Sbjct 266539 CGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACGCCTCTCCGACCCTCTTCAA 266598
Query 19225 CGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAG 19284
|||||| || ||| |||||| |||| ||||| ||||| | || |||||||| |||||
Sbjct 266599 CGCCGGGACCAACCGGCCGCAGCTGTCCAGCTGCTTCCTGCTTGCCATGAAGGACGACAG 266658
Query 19285 CATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGG 19344
||| || ||||||||||| || || ||| ||||||||| ||| ||||||| | |||||
Sbjct 266659 CATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCTGGGGG 266718
Query 19345 TATCGG-GATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACG 19403
||||| | | || | ||||| |||| || | || || || ||||
Sbjct 266719 GATCGGCGTGGCGGTGAGC-TGCATCCGATCGACGGGAAGCTACATTGCCGGCACCAACG 266777
Query 19404 GAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCA 19463
| || |||| | ||||| ||||| | || | |||||||||||| | ||||||
Sbjct 266778 GCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACAACAACACGGCTCGCTACGTCG 266837
Query 19464 ACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGG 19523
||||||| ||| ||| | || | || ||||| ||||| || || |||||| |
Sbjct 266838 ACCAGGGCGGCAACAAGAGACCCGGGGCCTTTGCCATGTACCTGGAACCGTGGCACTTCG 266897
Query 19524 ACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCG 19583
|||| | || ||||| || ||| |||| || | |||||| | | | |
Sbjct 266898 ACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGAGCCAGAG 266957
Query 19584 ACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAG 19643
|||| ||| ||||||||||| |||||||| |||||| ||| || || | || | |
Sbjct 266958 ACCTTTTCTACGCCTTGTGGATCCCGGACCTGTTCATGAAGAGAGTGGAAAGCAACCAGG 267017
Query 19644 AATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGT 19703
| ||| | ||||||| || ||| || ||||| || ||| || || |||| ||
Sbjct 267018 ACTGGTCCTTGATGTGTCCCAGCGAGTGTCCTGGGCTGGACGAGTGCTGGGGAGAGGAGT 267077
Query 19704 TCAATGAGTTGT--ACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGC 19761
|| | || | | ||| || | | || | || || | |||| |||||| |||
Sbjct 267078 TCGAGAAGCTCTACACCAGATATGAGAAG--GAAGGGAGGGTGAAGAGGGTGGTGAAGGC 267135
Query 19762 CCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTG 19821
| | | ||||| || | || || | |||| ||| ||||| || || ||||||
Sbjct 267136 GCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAAACCGGGACGCCCTACATGCT 267195
Query 19822 CTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTC 19881
|||||||||||| ||| ||| || ||| ||||| | ||| | ||||| |
Sbjct 267196 CTACAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAATGCAG 267255
Query 19882 CAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCT 19941
|||||| || || || | ||||| ||| ||||||| ||||| || || ||
Sbjct 267256 CAACCTCTGCACAGAGGTGGTGGAGTACACCAGCAAGGACGAGGTGGCCGTCTGCAACCT 267315
Query 19942 GGCGTCCCTGTGCCTGCCGACTTTCGTCAAG-----GCCTCCTCCTTCGACTTTGCCAAA 19996
||| ||| | ||| | | ||||| | || || |||||||| ||
Sbjct 267316 GGCCTCCATCGCCCTCAACATGTACGTCACGCCAGAGCGGACT--TTCGACTTCAAGAAG 267373
Query 19997 TTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTT 20056
|| | || ||| ||| || | || || || ||||||| || |
Sbjct 267374 CTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCTCAACAAGATCATCGACATCAATTAC 267433
Query 20057 TACCCG---ACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGC 20113
|||||| |||| || | | | ||| || | ||||||| ||||||||| |||||||
Sbjct 267434 TACCCGGTCCCCGAAGCCGAG---ACGTCCAACAAGCGCCACAGGCCGATCGGGATCGGC 267490
Query 20114 GTCCAGGGCCTGGCCGACGTTTTCATGATGCT-CGGCCTCTCATTCGACGATCCCAAGGC 20172
|||||||| |||||||| | ||||| || | || | || | ||||| ||| | ||
Sbjct 267491 GTCCAGGGTCTGGCCGATGCCTTCATCCTGATGCGACATC-CGTTCGAAAGCCCCGAAGC 267549
Query 20173 GCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTG 20232
| |||||||| ||||||||| || | |||||||| ||||| || ||
Sbjct 267550 CCAGCTGCTCAACATCCAGATCTTCGAGACCATCTACCACGCCGCCCTGGAGGCCAGCTG 267609
Query 20233 CGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGG 20292
|||||||||| |||| |||||| |||||||||| | |||| |||||| | ||||
Sbjct 267610 CGAACTCGCCGCAGAGCTCGGCCCCTACGAGACGTACGAGGGCTCGCCCATCAGCAAGGG 267669
Query 20293 TATCCTCCAGCCGGACATGTGG--GGCGTCACTGA--GA---ATGAGTTTTGGAGCGCCC 20345
||||||||| ||||||||| | | ||| || || || | | | ||| |
Sbjct 267670 CATCCTCCAGTACGACATGTGGGAGAAGACACCGACCGACCTGTGGGACTGGAAGC-TGC 267728
Query 20346 TCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGA 20405
| |||| ||||| | ||||| | | ||| |||| | ||||||||||| |
Sbjct 267729 TGAAGGAGAAGATCGCCAAACACGGCGTGAGGAACAGCCTGCTGCTGGCGCCCATGCCCA 267788
Query 20406 CCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACA 20465
| || || |||||||||||| |||| ||||||||| | ||||| ||||||| | |||||
Sbjct 267789 CGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCGTACACCAGCAACA 267848
Query 20466 TCTAC 20470
|||||
Sbjct 267849 TCTAC 267853
>seq120
Length=551038
Score = 104 bits (114), Expect = 3e-17
Identities = 101/130 (78%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041
||||| | ||||| ||| ||||| || ||||||||||| ||||| ||| ||||||
Sbjct 520278 CGTCTTGTGGCTTTCGCAGCAGTGGAGGGGATCTTCTTCTCAGGCTCATTCGCTGCTATC 520337
Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101
| |||||| || ||| | ||||||||||| ||||| | | ||||||||| || ||| |
Sbjct 520338 TACTGGCTGAAGAAGAGAGGCCTCATGCCAGGCCTTACCTACTCCAACGAACTCATTAGC 520397
Query 60102 CGGGACGAGG 60111
|||||||||
Sbjct 520398 AGGGACGAGG 520407
>seq541
Length=321934
Score = 98.7 bits (108), Expect = 1e-15
Identities = 86/107 (80%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 79099 TCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTC 79158
|||| ||| |||||||| | ||| |||||||||||||| | || | ||||||| ||
Sbjct 160852 TCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTC 160911
Query 79159 TTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205
||| ||| ||||||||||||||| |||||||||||| || |||||
Sbjct 160912 TTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTC 160958
>seq768
Length=308456
Score = 95.1 bits (104), Expect = 1e-14
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061
|||||| ||||||||||||||||| |||||| || || |||||||| || ||| | ||
Sbjct 127854 CGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCCATCTTCTGGCTGAAGAAGAGAGG 127913
Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111
||| ||||| ||||||| ||| ||||||||| || || |||||||
Sbjct 127914 CCTGATGCCTGGCCTGACCTTCAGCAACGAGCTCATCAGTCGAGACGAGG 127963
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 60345 AACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAG 60404
||||| ||||||| ||||||| ||| || |||| ||||||||||||||||||||||||
Sbjct 128749 AACCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAG 128808
Query 60405 CGGGTCGGGGATTA 60418
||||||||||| ||
Sbjct 128809 CGGGTCGGGGAGTA 128822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548400661981200
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