Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq406 444 6e-120 seq120 104 3e-17 seq541 98.7 1e-15 seq768 95.1 1e-14 >seq406 Length=364117 Score = 444 bits (492), Expect = 6e-120 Identities = 986/1455 (68%), Gaps = 43/1455 (3%) Strand=Plus/Minus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 |||||| |||| ||| || ||| |||||||||| | ||||||| ||||| | ||| Sbjct 267880 GAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTC 267821 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626 |||||| |||| |||||||||||| || || || |||||||| || | ||| || || Sbjct 267820 GTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTT 267761 Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAGG------CCGTCCCAAAATTCATTCGC 78680 || | || || | ||||| |||| || | |||||| | || ||| Sbjct 267760 CCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGG 267701 Query 78681 CGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCG--GACGCCGGCGACCCCTTGAAC 78738 | || |||||||||| || ||||| |||| | || | ||||| |||| | || Sbjct 267700 TGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGATG--GGCGAGCCCTCGTAC 267643 Query 78739 GTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT---GACTCGAGCAGGGCCGCGTGG 78795 |||||||| | || ||| |||||||||||| | ||| |||||| |||||| Sbjct 267642 GTCTCGTAGGGGCCGAGCTCTGCGGCGAGTTCGCAGCTGGCCTC---CAGGGCGGCGTGG 267586 Query 78796 TACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTT--GGTCTCGTCGAACGAAA 78853 || | | ||||||||| |||||||| || | ||| || || ||||||| | Sbjct 267585 TAGATGGTCTCGAAGATCTGGATGTTGAGCA-GCTGGGCTTCGGGGCTT-TCGAACGGAT 267528 Query 78854 GGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGC 78913 | | | || |||||| |||||||||| |||||||||||||| ||||||| | ||||| Sbjct 267527 GTCGCATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGC 267468 Query 78914 GCATGTTGCTCTT-TCGGGCCGCCTCGGT---CGGGTAAAAGTTCCGATCGATGACGCGG 78969 || ||||| | | |||| | |||| |||||| | || ||||||| | Sbjct 267467 GCTTGTTGGACGTCTCGG----CTTCGGGGACCGGGTAGTAATTGATGTCGATGATCTTG 267412 Query 78970 TTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAAT---GA 79026 || ||||| | || ||| || || | || || ||| || ||| | Sbjct 267411 TTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGC 267352 Query 79027 TTTCCTTTGATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCC 79086 | | ||| | | | ||| | || ||||||||||| |||||| ||||||| Sbjct 267351 TCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCC 267292 Query 79087 GGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTC 79146 ||| | ||| | | |||||||| | || | ||||||||||| | |||| Sbjct 267291 TTGCTGGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTC 267232 Query 79147 TTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCA 79206 | ||||||||||||| ||| || |||||||||||| |||||| ||||||||||| || Sbjct 267231 TGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCG 267172 Query 79207 ACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGA 79266 ||| || || | | ||| ||||| | | | ||| || ||| |||| ||| Sbjct 267171 GTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCTTCACCACCCTCTT-CACCCT 267113 Query 79267 CCCTGTGCGACGTACGTCCG--GTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCA 79324 |||| | | | | || | ||| | || | ||| |||| || || ||| || Sbjct 267112 CCCT-TCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCA 267054 Query 79325 GGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCA 79384 | || || |||||| || ||||||| | |||||||| || | || || ||| || Sbjct 267053 GCCCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTTTCCACTCTCTTCA 266994 Query 79385 TGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGC 79444 |||| |||||||||||||||| ||| ||| ||||| | | | | |||||| | | Sbjct 266993 TGAACAGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTC 266934 Query 79445 CCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGA 79504 | |||| |||||| || ||||| | | |||| ||||||||| ||||| || | Sbjct 266933 CTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACA 266874 Query 79505 TGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGA 79564 |||| || | || | |||| ||||||||||| |||||| || |||||||||||| Sbjct 266873 TGGCAAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGT 266814 Query 79565 AAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGAT-TCGTGTA 79623 |||||| ||||| || || | |||| || | |||||| || ||| || | | | Sbjct 266813 AAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCAATGTAGCTTC 266754 Query 79624 CCGCTCGCCCGAATGTTCGAGCAGTG-GATTCCGATGCCCCCGGACCACTTGGAGATGTG 79682 ||| ||| || ||| | || | | ||||| ||||| | ||||||| ||| | Sbjct 266753 CCG-TCGATCGGATG-CAGCTCACCGCCACGCCGATCCCCCCAGCGGACTTGGAAATGAG 266696 Query 79683 CGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAG 79742 |||||||| ||| || || ||||||||||| ||||| |||||||||||| || | ||| Sbjct 266695 CGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCAAGCAG 266636 Query 79743 GAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTG 79802 ||||||||| |||| ||| || ||| || |||||||||||||||||||| | ||||| Sbjct 266635 GAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTG 266576 Query 79803 CGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGAC-GCGCGGGAGGTCGTCG- 79860 ||||| |||| | || || | ||| ||||| || | ||| | ||| ||| Sbjct 266575 GGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCAGCG-TCAATGTC-TCGC 266518 Query 79861 CCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGGCGTCTCGCCGACATTCAGG 79920 |||||||| || |||| || | ||||| | || ||| ||| |||| | || ||| | Sbjct 266517 CCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCG 266458 Query 79921 TAGCCCTTCTGCAGG 79935 | | |||| ||||| Sbjct 266457 TTGATCTTCAGCAGG 266443 Score = 351 bits (388), Expect = 1e-91 Identities = 881/1325 (66%), Gaps = 29/1325 (2%) Strand=Plus/Plus Query 19165 CGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAA 19224 |||||| ||| |||| || |||||| ||||| ||||| | |||||||| ||||| Sbjct 266539 CGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACGCCTCTCCGACCCTCTTCAA 266598 Query 19225 CGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAG 19284 |||||| || ||| |||||| |||| ||||| ||||| | || |||||||| ||||| Sbjct 266599 CGCCGGGACCAACCGGCCGCAGCTGTCCAGCTGCTTCCTGCTTGCCATGAAGGACGACAG 266658 Query 19285 CATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGG 19344 ||| || ||||||||||| || || ||| ||||||||| ||| ||||||| | ||||| Sbjct 266659 CATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCTGGGGG 266718 Query 19345 TATCGG-GATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACG 19403 ||||| | | || | ||||| |||| || | || || || |||| Sbjct 266719 GATCGGCGTGGCGGTGAGC-TGCATCCGATCGACGGGAAGCTACATTGCCGGCACCAACG 266777 Query 19404 GAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCA 19463 | || |||| | ||||| ||||| | || | |||||||||||| | |||||| Sbjct 266778 GCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACAACAACACGGCTCGCTACGTCG 266837 Query 19464 ACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGG 19523 ||||||| ||| ||| | || | || ||||| ||||| || || |||||| | Sbjct 266838 ACCAGGGCGGCAACAAGAGACCCGGGGCCTTTGCCATGTACCTGGAACCGTGGCACTTCG 266897 Query 19524 ACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCG 19583 |||| | || ||||| || ||| |||| || | |||||| | | | | Sbjct 266898 ACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGAGCCAGAG 266957 Query 19584 ACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAG 19643 |||| ||| ||||||||||| |||||||| |||||| ||| || || | || | | Sbjct 266958 ACCTTTTCTACGCCTTGTGGATCCCGGACCTGTTCATGAAGAGAGTGGAAAGCAACCAGG 267017 Query 19644 AATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGT 19703 | ||| | ||||||| || ||| || ||||| || ||| || || |||| || Sbjct 267018 ACTGGTCCTTGATGTGTCCCAGCGAGTGTCCTGGGCTGGACGAGTGCTGGGGAGAGGAGT 267077 Query 19704 TCAATGAGTTGT--ACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGC 19761 || | || | | ||| || | | || | || || | |||| |||||| ||| Sbjct 267078 TCGAGAAGCTCTACACCAGATATGAGAAG--GAAGGGAGGGTGAAGAGGGTGGTGAAGGC 267135 Query 19762 CCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTG 19821 | | | ||||| || | || || | |||| ||| ||||| || || |||||| Sbjct 267136 GCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAAACCGGGACGCCCTACATGCT 267195 Query 19822 CTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTC 19881 |||||||||||| ||| ||| || ||| ||||| | ||| | ||||| | Sbjct 267196 CTACAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAATGCAG 267255 Query 19882 CAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCT 19941 |||||| || || || | ||||| ||| ||||||| ||||| || || || Sbjct 267256 CAACCTCTGCACAGAGGTGGTGGAGTACACCAGCAAGGACGAGGTGGCCGTCTGCAACCT 267315 Query 19942 GGCGTCCCTGTGCCTGCCGACTTTCGTCAAG-----GCCTCCTCCTTCGACTTTGCCAAA 19996 ||| ||| | ||| | | ||||| | || || |||||||| || Sbjct 267316 GGCCTCCATCGCCCTCAACATGTACGTCACGCCAGAGCGGACT--TTCGACTTCAAGAAG 267373 Query 19997 TTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTT 20056 || | || ||| ||| || | || || || ||||||| || | Sbjct 267374 CTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCTCAACAAGATCATCGACATCAATTAC 267433 Query 20057 TACCCG---ACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGC 20113 |||||| |||| || | | | ||| || | ||||||| ||||||||| ||||||| Sbjct 267434 TACCCGGTCCCCGAAGCCGAG---ACGTCCAACAAGCGCCACAGGCCGATCGGGATCGGC 267490 Query 20114 GTCCAGGGCCTGGCCGACGTTTTCATGATGCT-CGGCCTCTCATTCGACGATCCCAAGGC 20172 |||||||| |||||||| | ||||| || | || | || | ||||| ||| | || Sbjct 267491 GTCCAGGGTCTGGCCGATGCCTTCATCCTGATGCGACATC-CGTTCGAAAGCCCCGAAGC 267549 Query 20173 GCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTG 20232 | |||||||| ||||||||| || | |||||||| ||||| || || Sbjct 267550 CCAGCTGCTCAACATCCAGATCTTCGAGACCATCTACCACGCCGCCCTGGAGGCCAGCTG 267609 Query 20233 CGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGG 20292 |||||||||| |||| |||||| |||||||||| | |||| |||||| | |||| Sbjct 267610 CGAACTCGCCGCAGAGCTCGGCCCCTACGAGACGTACGAGGGCTCGCCCATCAGCAAGGG 267669 Query 20293 TATCCTCCAGCCGGACATGTGG--GGCGTCACTGA--GA---ATGAGTTTTGGAGCGCCC 20345 ||||||||| ||||||||| | | ||| || || || | | | ||| | Sbjct 267670 CATCCTCCAGTACGACATGTGGGAGAAGACACCGACCGACCTGTGGGACTGGAAGC-TGC 267728 Query 20346 TCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGA 20405 | |||| ||||| | ||||| | | ||| |||| | ||||||||||| | Sbjct 267729 TGAAGGAGAAGATCGCCAAACACGGCGTGAGGAACAGCCTGCTGCTGGCGCCCATGCCCA 267788 Query 20406 CCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACA 20465 | || || |||||||||||| |||| ||||||||| | ||||| ||||||| | ||||| Sbjct 267789 CGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCGTACACCAGCAACA 267848 Query 20466 TCTAC 20470 ||||| Sbjct 267849 TCTAC 267853 >seq120 Length=551038 Score = 104 bits (114), Expect = 3e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 ||||| | ||||| ||| ||||| || ||||||||||| ||||| ||| |||||| Sbjct 520278 CGTCTTGTGGCTTTCGCAGCAGTGGAGGGGATCTTCTTCTCAGGCTCATTCGCTGCTATC 520337 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 | |||||| || ||| | ||||||||||| ||||| | | ||||||||| || ||| | Sbjct 520338 TACTGGCTGAAGAAGAGAGGCCTCATGCCAGGCCTTACCTACTCCAACGAACTCATTAGC 520397 Query 60102 CGGGACGAGG 60111 ||||||||| Sbjct 520398 AGGGACGAGG 520407 >seq541 Length=321934 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 79099 TCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTC 79158 |||| ||| |||||||| | ||| |||||||||||||| | || | ||||||| || Sbjct 160852 TCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTC 160911 Query 79159 TTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 ||| ||| ||||||||||||||| |||||||||||| || ||||| Sbjct 160912 TTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTC 160958 >seq768 Length=308456 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 |||||| ||||||||||||||||| |||||| || || |||||||| || ||| | || Sbjct 127854 CGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCCATCTTCTGGCTGAAGAAGAGAGG 127913 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 ||| ||||| ||||||| ||| ||||||||| || || ||||||| Sbjct 127914 CCTGATGCCTGGCCTGACCTTCAGCAACGAGCTCATCAGTCGAGACGAGG 127963 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60345 AACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAG 60404 ||||| ||||||| ||||||| ||| || |||| |||||||||||||||||||||||| Sbjct 128749 AACCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAG 128808 Query 60405 CGGGTCGGGGATTA 60418 ||||||||||| || Sbjct 128809 CGGGTCGGGGAGTA 128822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548400661981200