Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq406 223 4e-53 seq1672 95.1 1e-14 seq1593 87.8 2e-12 seq768 87.8 2e-12 >seq406 Length=364117 Score = 223 bits (246), Expect = 4e-53 Identities = 479/702 (68%), Gaps = 12/702 (2%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || |||||| | || ||||| |||||||| || || || | || ||| || Sbjct 266564 AAGTGGTTCACCCACGCCTCTCCGACCCTCTTCAACGCCGGGACCAACCGGCCGCAGCTG 266623 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || |||||||||||| | || |||||||| ||| ||||| ||||||||||| || || Sbjct 266624 TCCAGCTGCTTCCTGCTTGCCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTG 266683 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT-CCACTGCTCGAACGT 53445 ||| |||| || | ||| ||||||| | || || ||||| | | || | | | Sbjct 266684 AAGCAGTGCGCGCTCATTTCCAAGTCCGCTGGGGGGATCGGCGTGGCGGTGAGC-TGCAT 266742 Query 53446 CCGTGCGAACGGCACACCA-ATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTA 53504 ||| || |||| | | | || || || |||||| | || | ||| | || || | Sbjct 266743 CCGATCG-ACGGGAAGCTACATTGCCGGCACCAACGGCAACTCCAACGGATTGGTCCCGA 266801 Query 53505 TGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGG 53564 |||| | || | |||||||||||| || |||||| ||||||| || ||| | | Sbjct 266802 TGCTGAGAGTTTACAACAACACGGCTCGCTACGTCGACCAGGGCGGCAACAAGAGACCCG 266861 Query 53565 GGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGC 53624 || | || ||||| ||||| || ||||||||| |||| | | || || || |||||| Sbjct 266862 GGGCCTTTGCCATGTACCTGGAACCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGA 266921 Query 53625 GTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATT 53683 ||| || | || ||| | | | | ||||| || ||| || ||||||| Sbjct 266922 AGAAGAACACAGGAAAGGAGGAGCAGAGAGCCAGAGACCTTTTCTAC-GCCTTGTGGATC 266980 Query 53684 CCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAAC 53743 |||||||| |||||| | | ||||| | || |||| |||| | ||||||| || | | Sbjct 266981 CCGGACCTGTTCATGAAGAGAGTGGAAAGCAACCAGGACTGGTCCTTGATGTGTCCCAGC 267040 Query 53744 GAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGT--ATCGGACG 53800 ||||| || || || | | ||| || || |||||||| | || | | | | || Sbjct 267041 GAGTGTCCTGGGCTGGACGAGTG-CTGGGGAGAGGAGTTCGAGAAGCTCTACACCAGATA 267099 Query 53801 TACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATC 53860 | | || |||| | | |||| | ||| ||||||| || | ||| | || ||| Sbjct 267100 TGAGAAG-GAAGGGAGGGT-GAAGAGGGTGGTGAAGGCGCAGCAGCTCTGGTACGCCATC 267157 Query 53861 CTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAG 53920 || || |||| || || || ||||| |||||| ||||||||| | |||| | Sbjct 267158 ATCGAGTCCCAGACCGAAACCGGGACGCCCTACATGCTCTACAAGGACGCTTGCAACAGG 267217 Query 53921 AAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 |||||||||||| ||||| | ||| |||||||| |||||| Sbjct 267218 AAGAGCAACCAGCAGAACCTGGGCACCATCAAATGCAGCAAC 267259 Score = 105 bits (116), Expect = 7e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| ||||||| ||||| || ||||| || || |||||| |||||||||||||| | Sbjct 267766 CCTGCTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTC 267825 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611 ||||| ||||||| | |||||||||| ||| || || | || ||||| || Sbjct 267826 CATCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCGGAGAGTTCCAGAT 267885 Query 55612 GATCAACAAGCACCTCGTCAAGGACCTG 55639 ||||| |||||| ||||||||||| Sbjct 267886 CGTCAACCCTCACCTCCTCAAGGACCTG 267913 >seq1672 Length=142646 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| |||||||| ||||| ||| || || ||||| || || Sbjct 90085 GTGAAGATGTAACGGGGGCTGGCAGCATCTTTGCCTCCATTAATGCGAGTACCAAACTGA 90144 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||||| ||||||| |||||||||||| || || ||||| ||| Sbjct 90145 CCCAGAGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCTAAGTTCACA 90204 Query 117425 ATCGT 117429 || || Sbjct 90205 ATGGT 90209 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG- 152087 ||||||||||| |||| |||||| ||||| ||||| || | || || |||||||| Sbjct 90085 GTGAAGATGTAACGGGGGCTGGCAGCATCTTTGCCTCCATTAATGCGAGTACCAAACTGA 90144 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| |||| |||| ||| | ||||||| |||||| || ||||| || || ||||| Sbjct 90145 CCCAGA-GGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCTAAGTTCAC 90203 Query 152148 AATCGT 152153 ||| || Sbjct 90204 AATGGT 90209 >seq1593 Length=225947 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | |||||||| || ||||| |||||||||||| Sbjct 69123 GTGAAGATGTATCGAGGGCTGGCTGAGTCCTTGCCGCCGTGCAGCCTGGTTCCAAACTGT 69182 Query 152089 -CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAA 152142 ||||| |||| || ||||| | ||||||| ||||| || ||||| || ||| Sbjct 69183 CCCAGA-GGCTGCAGCAGGTTCATGTTGTTGCTTCCCACAAAGTTCTGGGCTAAA 69236 >seq768 Length=308456 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||||||||| ||||| |||||||||||||| |||| || ||||||||||| Sbjct 128822 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTCCAGAGAAATGTTCTCCATG 128763 Query 74523 CAGTCGAAAGGGTTCT 74538 ||||||| ||||||| Sbjct 128762 AAGTCGAACGGGTTCT 128747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547092158179000