Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq406 205 1e-47
seq1594 167 3e-36
seq541 113 5e-20
seq1672 87.8 2e-12
>seq406
Length=364117
Score = 205 bits (226), Expect = 1e-47
Identities = 915/1421 (64%), Gaps = 59/1421 (4%)
Strand=Plus/Minus
Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454
||||| | ||| | | ||||||||| || |||||||| || ||| |||||| |||||
Sbjct 267840 GTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATG 267781
Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAA-ATCTGA 80513
|| | | || ||| |||| || |||||| || ||| | ||| || | ||
Sbjct 267780 GGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTC 267721
Query 80514 CCAAAAATCAACCCCAA--CGCT--GTGAC----CCCACATGTCGTGCTGCAAGATGCCC 80565
| | || || || || | ||| | |||||||||||| ||| | |||||||
Sbjct 267720 C----AGTC--CCACAGGTCGGTCGGTGTCTTCTCCCACATGTCGTACTGGAGGATGCCC 267667
Query 80566 T--CCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTT-GGCCAGCTCA 80622
| | || | || || ||| || |||||||||| ||||| | ||| ||| || ||
Sbjct 267666 TTGCTGATG--GGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGC-TCTGCGGCGAGTTCG 267610
Query 80623 CAC---GACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCG 80679
|| | ||||| |||| ||||| || ||| ||| |||| |||| | | |
Sbjct 267609 CAGCTGGCCTCCA---GGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAG-CAG 267554
Query 80680 CGCGCCTGTGGGTCGT-CGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTG 80738
| | || ||| | | |||||| | ||||| ||||| | || ||||| |||||
Sbjct 267553 CTGGGCTTCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCATCGGCCAGACCCTG 267494
Query 80739 AACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTA 80798
|||||||| ||||||| | |||||||||||| || |||||| || || | |||||
Sbjct 267493 GACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCTTCGGGGACCGGGTA 267434
Query 80799 AAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAAC--CCGTG-TAACATCATG 80855
| || | ||||||| ||| ||||| | | || | || || | ||
Sbjct 267433 GTAATTGATGTCGATGATCTTGTTGAGGTT---TTTCACGATTACCTTGGTGACGGAGGC 267377
Query 80856 AAGTTTCTGAAAGTCGAA--TTGGTTCCC-CTTCAC--AAATGCCGGAAGGCTCAGGGAC 80910
|| |||| |||||||| | | || | | || | ||| | ||| | |||
Sbjct 267376 CAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTG--AGGGCGATGGAG 267319
Query 80911 GCCAGATTGCACACGGCCACCTCTTCA--GCATCTGTAAACTCGACGATTTCCGTGCACA 80968
||||| ||||| ||||||||||| || || |||| ||| || | || ||||| |
Sbjct 267318 GCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTA--CTCCACCACCTCTGTGCAGA 267261
Query 80969 AATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCT 81028
|| | || || || |||||||| | |||||| ||| ||||||||||||||
Sbjct 267260 GGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCT 267201
Query 81029 TGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCT 81088
||||| |||||| || || ||||| ||| ||| |||| || |||||||| ||| | ||
Sbjct 267200 TGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCT 267141
Query 81089 CGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCG 81147
||||||| |||||| | | | ||||| | |||| ||| ||| ||||||
Sbjct 267140 GCTGCGCCTTCACCACCCTCTTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTTC- 267082
Query 81148 TCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGC 81207
||||||| | || || || | || |||||| | || ||||||| | |
Sbjct 267081 TCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCAAGGAC 267022
Query 81208 CAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAAC 81267
||||| || | | || || ||||||||| ||| |||||||| | |||| |||
Sbjct 267021 CAGTCCTGGTTGCTTTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAA 266962
Query 81268 AGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATG 81327
||||| | | | | |||||| | || ||| || ||| || ||||| |
Sbjct 266961 AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAAC 266902
Query 81328 ATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC------CTTGCGACGGCCA 81381
| ||| ||||| || ||||| |||| ||| | | ||| |||| |||
Sbjct 266901 ACGTCGAAGTGCCACGGTTCCAGGTACATGGCAAAGGCCCCGGGTCTCTTG---TTGCCG 266845
Query 81382 CCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCT 81441
||||||| |||||| || || || ||| | || | || ||| |||| | || |
Sbjct 266844 CCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTG 266785
Query 81442 GACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGA 81501
|| | ||||| || || | || ||| | | || | ||| | | |
Sbjct 266784 GAGTTGCCGTTGGTGCCGGCAATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCCACG 266725
Query 81502 CCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCC 81561
||||| || || | |||| ||||| | || ||| | |||| ||| || || || ||
Sbjct 266724 CCGATCCCCCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCT 266665
Query 81562 TCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG 81621
|||||||| || | |||||| |||||| ||| ||||| |||| ||| || | || |
Sbjct 266664 TCGATGCTGTCGTCCTTCATGGCAAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTC 266605
Query 81622 CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAG 81681
||||| ||||| || || || | ||||| |||| | | |||| |||| |||
Sbjct 266604 CCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAG 266545
Query 81682 GTTTCCTTGAC-GCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACAT 81740
|| || || | |||| ||| || ||||| || || | | || | ||| | |||
Sbjct 266544 GTCTCGATGGCAGCGT-CAATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCAT 266486
Query 81741 GTACTGGGGCGTCTCGCCTGCGTTCAGGTACATCTTCTGCA 81781
|| ||| ||| |||| | | ||| || |||||| |||
Sbjct 266485 GTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCA 266445
>seq1594
Length=294527
Score = 167 bits (184), Expect = 3e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || ||||||||||| || || || ||||||||| | |
Sbjct 184258 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 184199
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || | ||||| || || ||||| |||||||| || || || ||||||
Sbjct 184198 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 184139
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || |||||||| ||||| || || |||| || ||||| | ||||| ||
Sbjct 184138 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 184079
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| ||||| || ||| | ||||| | |||||
Sbjct 184078 ATCCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTCAGGGGTGG 184032
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| || |||||||| || || || || ||||| || | |
Sbjct 184486 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAACCCAGC 184427
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || | || || ||||| ||||| |||||||| || || || ||||||
Sbjct 184426 GACACCATTGAGAACGTCAAAGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 184367
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || ||||| || ||||| || || |||| || ||||| | ||||| |||
Sbjct 184366 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAT 184307
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||||| |||||||| || ||||| ||| | ||||| | |||||
Sbjct 184306 ATCCAAAAAGAATCCACCCTCCATCTTGTCCTCCGTCTGAGGGGTGG 184260
Score = 154 bits (170), Expect = 2e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || ||||||||||| || || || || |||||| | ||
Sbjct 184030 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 183971
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| | ||||| ||||| ||||| |||||||| || || || ||||||
Sbjct 183970 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 183911
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || ||||| || ||||| || ||||||| || || || | || || ||
Sbjct 183910 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGATTACAAC 183851
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| || ||||| || || || || || | ||||| | ||||| ||
Sbjct 183850 ATCCAGAAAGAATCTACCCTCCACCTTGTTCTCCGTCTGAGGGGTGGCCA 183801
>seq541
Length=321934
Score = 113 bits (124), Expect = 5e-20
Identities = 118/155 (76%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009
|||||||| || ||||| | ||| ||||| || || ||||| |||| |||||| | |
Sbjct 160852 TCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTC 160911
Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069
|| |||||| |||||||||||| ||||||||| ||||| ||||| ||| |||| |
Sbjct 160912 TTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGCGACTCG 160971
Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104
| |||||||| ||| | || | ||||| |||||
Sbjct 160972 ATGATGGCGTACCAGAGCTGCTGAGCCTTCACCAC 161006
>seq1672
Length=142646
Score = 87.8 bits (96), Expect = 2e-12
Identities = 97/127 (76%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184
|||||||| ||| | || ||||||||||| || || ||| ||||| | || ||||
Sbjct 90209 ACCATTGTGAACTTAGCCCAGAACTTTGTGGGCAGCAACAACGTGAACATCCTGCAGCC- 90151
Query 32185 TCTGGA-CAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243
||||| |||||||| || || | || ||||| |||||||| ||| ||||||||||
Sbjct 90150 TCTGGGTCAGTTTGGTACTCGCATTAATGGAGGCAAAGATGCTGCCAGCCCCCGTTACAT 90091
Query 32244 CTTCACC 32250
|||||||
Sbjct 90090 CTTCACC 90084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570181331627600
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