Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq406 205 1e-47 seq1594 167 3e-36 seq541 113 5e-20 seq1672 87.8 2e-12 >seq406 Length=364117 Score = 205 bits (226), Expect = 1e-47 Identities = 915/1421 (64%), Gaps = 59/1421 (4%) Strand=Plus/Minus Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454 ||||| | ||| | | ||||||||| || |||||||| || ||| |||||| ||||| Sbjct 267840 GTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATG 267781 Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAA-ATCTGA 80513 || | | || ||| |||| || |||||| || ||| | ||| || | || Sbjct 267780 GGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTC 267721 Query 80514 CCAAAAATCAACCCCAA--CGCT--GTGAC----CCCACATGTCGTGCTGCAAGATGCCC 80565 | | || || || || | ||| | |||||||||||| ||| | ||||||| Sbjct 267720 C----AGTC--CCACAGGTCGGTCGGTGTCTTCTCCCACATGTCGTACTGGAGGATGCCC 267667 Query 80566 T--CCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTT-GGCCAGCTCA 80622 | | || | || || ||| || |||||||||| ||||| | ||| ||| || || Sbjct 267666 TTGCTGATG--GGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGC-TCTGCGGCGAGTTCG 267610 Query 80623 CAC---GACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCG 80679 || | ||||| |||| ||||| || ||| ||| |||| |||| | | | Sbjct 267609 CAGCTGGCCTCCA---GGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAG-CAG 267554 Query 80680 CGCGCCTGTGGGTCGT-CGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTG 80738 | | || ||| | | |||||| | ||||| ||||| | || ||||| ||||| Sbjct 267553 CTGGGCTTCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCATCGGCCAGACCCTG 267494 Query 80739 AACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTA 80798 |||||||| ||||||| | |||||||||||| || |||||| || || | ||||| Sbjct 267493 GACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCTTCGGGGACCGGGTA 267434 Query 80799 AAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAAC--CCGTG-TAACATCATG 80855 | || | ||||||| ||| ||||| | | || | || || | || Sbjct 267433 GTAATTGATGTCGATGATCTTGTTGAGGTT---TTTCACGATTACCTTGGTGACGGAGGC 267377 Query 80856 AAGTTTCTGAAAGTCGAA--TTGGTTCCC-CTTCAC--AAATGCCGGAAGGCTCAGGGAC 80910 || |||| |||||||| | | || | | || | ||| | ||| | ||| Sbjct 267376 CAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTG--AGGGCGATGGAG 267319 Query 80911 GCCAGATTGCACACGGCCACCTCTTCA--GCATCTGTAAACTCGACGATTTCCGTGCACA 80968 ||||| ||||| ||||||||||| || || |||| ||| || | || ||||| | Sbjct 267318 GCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTA--CTCCACCACCTCTGTGCAGA 267261 Query 80969 AATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCT 81028 || | || || || |||||||| | |||||| ||| |||||||||||||| Sbjct 267260 GGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCT 267201 Query 81029 TGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCT 81088 ||||| |||||| || || ||||| ||| ||| |||| || |||||||| ||| | || Sbjct 267200 TGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCT 267141 Query 81089 CGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCG 81147 ||||||| |||||| | | | ||||| | |||| ||| ||| |||||| Sbjct 267140 GCTGCGCCTTCACCACCCTCTTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTTC- 267082 Query 81148 TCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGC 81207 ||||||| | || || || | || |||||| | || ||||||| | | Sbjct 267081 TCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCAAGGAC 267022 Query 81208 CAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAAC 81267 ||||| || | | || || ||||||||| ||| |||||||| | |||| ||| Sbjct 267021 CAGTCCTGGTTGCTTTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAA 266962 Query 81268 AGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATG 81327 ||||| | | | | |||||| | || ||| || ||| || ||||| | Sbjct 266961 AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAAC 266902 Query 81328 ATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC------CTTGCGACGGCCA 81381 | ||| ||||| || ||||| |||| ||| | | ||| |||| ||| Sbjct 266901 ACGTCGAAGTGCCACGGTTCCAGGTACATGGCAAAGGCCCCGGGTCTCTTG---TTGCCG 266845 Query 81382 CCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCT 81441 ||||||| |||||| || || || ||| | || | || ||| |||| | || | Sbjct 266844 CCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTG 266785 Query 81442 GACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGA 81501 || | ||||| || || | || ||| | | || | ||| | | | Sbjct 266784 GAGTTGCCGTTGGTGCCGGCAATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCCACG 266725 Query 81502 CCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCC 81561 ||||| || || | |||| ||||| | || ||| | |||| ||| || || || || Sbjct 266724 CCGATCCCCCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCT 266665 Query 81562 TCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG 81621 |||||||| || | |||||| |||||| ||| ||||| |||| ||| || | || | Sbjct 266664 TCGATGCTGTCGTCCTTCATGGCAAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTC 266605 Query 81622 CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAG 81681 ||||| ||||| || || || | ||||| |||| | | |||| |||| ||| Sbjct 266604 CCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAG 266545 Query 81682 GTTTCCTTGAC-GCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACAT 81740 || || || | |||| ||| || ||||| || || | | || | ||| | ||| Sbjct 266544 GTCTCGATGGCAGCGT-CAATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCAT 266486 Query 81741 GTACTGGGGCGTCTCGCCTGCGTTCAGGTACATCTTCTGCA 81781 || ||| ||| |||| | | ||| || |||||| ||| Sbjct 266485 GTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCA 266445 >seq1594 Length=294527 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||||||| | | Sbjct 184258 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 184199 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||| |||||||| || || || |||||| Sbjct 184198 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 184139 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 184138 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 184079 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| ||||| || ||| | ||||| | ||||| Sbjct 184078 ATCCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTCAGGGGTGG 184032 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || |||||||| || || || || ||||| || | | Sbjct 184486 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAACCCAGC 184427 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | || || ||||| ||||| |||||||| || || || |||||| Sbjct 184426 GACACCATTGAGAACGTCAAAGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 184367 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| ||| Sbjct 184366 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAT 184307 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| |||||||| || ||||| ||| | ||||| | ||||| Sbjct 184306 ATCCAAAAAGAATCCACCCTCCATCTTGTCCTCCGTCTGAGGGGTGG 184260 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || || |||||| | || Sbjct 184030 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 183971 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| ||||| ||||| |||||||| || || || |||||| Sbjct 183970 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 183911 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || ||||||| || || || | || || || Sbjct 183910 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGATTACAAC 183851 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| || ||||| || || || || || | ||||| | ||||| || Sbjct 183850 ATCCAGAAAGAATCTACCCTCCACCTTGTTCTCCGTCTGAGGGGTGGCCA 183801 >seq541 Length=321934 Score = 113 bits (124), Expect = 5e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009 |||||||| || ||||| | ||| ||||| || || ||||| |||| |||||| | | Sbjct 160852 TCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTC 160911 Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069 || |||||| |||||||||||| ||||||||| ||||| ||||| ||| |||| | Sbjct 160912 TTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGCGACTCG 160971 Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 | |||||||| ||| | || | ||||| ||||| Sbjct 160972 ATGATGGCGTACCAGAGCTGCTGAGCCTTCACCAC 161006 >seq1672 Length=142646 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 |||||||| ||| | || ||||||||||| || || ||| ||||| | || |||| Sbjct 90209 ACCATTGTGAACTTAGCCCAGAACTTTGTGGGCAGCAACAACGTGAACATCCTGCAGCC- 90151 Query 32185 TCTGGA-CAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243 ||||| |||||||| || || | || ||||| |||||||| ||| |||||||||| Sbjct 90150 TCTGGGTCAGTTTGGTACTCGCATTAATGGAGGCAAAGATGCTGCCAGCCCCCGTTACAT 90091 Query 32244 CTTCACC 32250 ||||||| Sbjct 90090 CTTCACC 90084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570181331627600