Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq157 145 6e-30
seq3511 100 2e-16
>seq157
Length=512728
Score = 145 bits (160), Expect = 6e-30
Identities = 133/168 (79%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282
||||||| |||||||||| || || |||||||| ||||| || ||||| |||||||| ||
Sbjct 347327 CATGTCCTTGTACTCTGCACCAAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGATC 347268
Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342
||||| ||||| | ||||||| ||||||| ||||| | ||| |||||||| ||
Sbjct 347267 CCCCTCCTCCCTCTCTGTGAAGCCCAGGTTGTCCAGGAAGTCACGGGACCCGTTGGCATC 347208
Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
||||||||| || || ||||| || ||||| |||| ||||| || ||
Sbjct 347207 CCAGATCTTCACTCCTTTCTCTGACAGCTCCTTGGCATTTGTTGATCC 347160
Score = 141 bits (156), Expect = 8e-29
Identities = 129/163 (79%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
|| || || | ||| || |||||||| ||||| || | ||||||||||||||| || ||
Sbjct 348227 AGTCCCGTAATGTGTGCAATCATGTAGGTGAGAAGTGCGTAGCTGGCGATGTTGAAAGGC 348168
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061
|| || || |||||||| | || | |||||| |||||||| || ||||| |||||||
Sbjct 348167 ACGCCCAGACCCATGTCGGCGGAGCGCTGGTACAGCTGACAAGACAGCTCCCCGTCGCAG 348108
Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGA 30104
||||| |||||||| | ||||||||| || || || |||||||
Sbjct 348107 ACGTAGAACTGACAGAGGGCGTGGCAGGGGGGCAGCGCCATGA 348065
Score = 82.4 bits (90), Expect = 6e-11
Identities = 71/88 (81%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 30114 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30173
||||||||||||||||||||| |||||| || | |||||| ||||| ||| ||||| ||
Sbjct 347979 CTTTGGGGTTCCAGGCGCACATGATGATCCGTCGGTCTTCCGGGTTTTTCTTGATGGTGT 347920
Query 30174 CCACGGCGTTTTGCAGCTGATCCACCCC 30201
| | | |||||| ||||| || || ||
Sbjct 347919 CGATGATGTTTTGTAGCTGGTCGACACC 347892
>seq3511
Length=43870
Score = 100 bits (110), Expect = 2e-16
Identities = 84/103 (82%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 110406 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 110465
||||||||||||||| | ||| |||||| || |||| || || ||||| || ||||| ||
Sbjct 34930 CTCCCTGCTGAGGACGATGTTGATCCTGCCTTTCAGTGGCCTGTTCTTCTCTGGGATTGA 34989
Query 110466 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508
|||||| ||||| || ||||| |||||||| ||| | |||||
Sbjct 34990 GAACCAGGTCTTCCTGCCCATGATCACCACATTCGTCCTGCCT 35032
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406220745705660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |