Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1594 102 5e-17 seq619 95.1 8e-15 >seq1594 Length=294527 Score = 102 bits (112), Expect = 5e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||| | |||| ||||| ||| || || || ||||| || || || Sbjct 188223 GCCACCCCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGA 188282 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 188283 CAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 188342 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | |||||||| || |||||| | ||||| | ||| ||||| | ||||| Sbjct 188343 GATGCCCTCCTTATCCTGGATCTTG-GCCTTAACATTCTCAATGGTGTCACTGGGCTCCA 188401 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 | || | ||| || ||||| ||||| | ||||||||||| |||||||| ||| Sbjct 188402 CCTCAAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTTG 188454 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||| | || | |||||| ||| || ||||| || || || || || Sbjct 184259 GCCACCCCTCAGACGGAGGACAAGATGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGA 184318 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 184319 CAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 184378 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | |||||||| || ||| ||| | ||| ||| | ||| ||||| | |||| Sbjct 184379 GATGCCCTCCTTATCCTGGAT-TTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGTTCCA 184437 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | |||| ||| || ||||| ||||| | || || ||||| ||||||||||| Sbjct 184438 CCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 184489 >seq619 Length=304156 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || || | ||||| ||||| ||| |||||| || ||||| || || || Sbjct 191816 CCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 191757 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || ||||| || ||||| || | | ||| ||||| || || Sbjct 191756 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGA 191697 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || || || |||||| | || ||| | ||| ||||| | |||||| Sbjct 191696 ATGCCTTCTTTATCCTGAATCTTT-GCCTTCACGTTCTCAATGGTGTCACTGGGCTCCAC 191638 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 |||| ||| || || || || || | |||||||| ||||||||||| || Sbjct 191637 CTCCAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCATCTT 191587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314660153438465