Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq157 132 4e-26 >seq157 Length=512728 Score = 132 bits (146), Expect = 4e-26 Identities = 128/162 (79%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC-GCGAA 34623 || ||||| | |||||||| ||||| |||||| ||||||| || ||||||||| |||| Sbjct 348055 GACCTCCCCATCATGGCGCTGCCCCCCTGCCACGCCCTCTGTCAGTTCTACGTCTGCGAC 348114 Query 34624 TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTT 34683 ||||||||||| || ||||| || || || || | |||||||| | || ||||| || Sbjct 348115 -GGGGAGCTGTCTTGTCAGCTGTACCAGCGCTCCGCCGACATGGGTCTGGGCGTGCCTTT 348173 Query 34684 CAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||| || || ||||| || ||||| |||||||| || || Sbjct 348174 CAACATCGCCAGCTACGCACTTCTCACCTACATGATTGCACA 348215 Score = 132 bits (146), Expect = 4e-26 Identities = 128/162 (79%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| ||||| || ||||| || || |||||||| ||||| || | ||| Sbjct 348215 TGTGCAATCATGTAGGTGAGAAGTGCGTAGCTGGCGATGTTGAAAGGCACGCCCAGACCC 348156 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC-GACGTAGAATTG 6738 ||||| | || || || || ||||| || ||||||||||| |||| ||||||||| || Sbjct 348155 ATGTCGGCGGAGCGCTGGTACAGCTGACAAGACAGCTCCCC-GTCGCAGACGTAGAACTG 348097 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||||| ||||| |||||||| | ||||| || Sbjct 348096 ACAGAGGGCGTGGCAGGGGGGCAGCGCCATGATGGGGAGGTC 348055 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 || |||||||||||||| || ||||||| || ||||| |||||||| | ||| ||| || Sbjct 347193 GGAGTGAAGATCTGGGATGCCAACGGGTCCCGTGACTTCCTGGACAACCTGGGCTTCACA 347252 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 |||||||||| || |||| || || || || ||||| ||||| |||||||| || Sbjct 347253 GAGAGGGAGGAGGGGGATCTGGGACCTGTGTATGGTTTCCAATGGAGGCACTTTGGTGCA 347312 Query 34442 GAGTA 34446 ||||| Sbjct 347313 GAGTA 347317 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| || |||||||| ||||| ||||| || || || || |||| || ||||||||| Sbjct 347317 TACTCTGCACCAAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGATCCCCCTCCTCC 347258 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | || ||| ||| | |||||||| ||||| || ||||||| || |||||||||||| Sbjct 347257 CTCTCTGTGAAGCCCAGGTTGTCCAGGAAGTCACGGGACCCGTTGGCATCCCAGATCTTC 347198 Query 7019 ACCCC 7023 || || Sbjct 347197 ACTCC 347193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448160952615600