Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq1594 167 5e-36
seq619 167 5e-36
seq1005 89.7 1e-12
>seq1594
Length=294527
Score = 167 bits (184), Expect = 5e-36
Identities = 164/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| |||||||| |||||||| || |||||||| || || | ||||| | ||||||
Sbjct 184047 AGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 184106
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| || ||||| || | || |||||||| || | || ||||| |||
Sbjct 184107 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 184166
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| || |||||||| | |||||||| || ||||| |||
Sbjct 184167 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTC 184226
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| ||||| || || | ||||||
Sbjct 184227 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 184258
Score = 158 bits (174), Expect = 3e-33
Identities = 164/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||||| || || ||||| ||||||||||| || || || | ||||| | ||||||
Sbjct 184275 AGGACAAGATGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCT 184334
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || || ||||| || | || |||||||| || | || ||||| |||
Sbjct 184335 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 184394
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || ||| ||||| || |||||||| | ||| ||||| || ||||| ||
Sbjct 184395 TGGATTTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTT 184454
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || ||||| ||||| ||||| | |||||| ||
Sbjct 184455 TTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 184489
Score = 152 bits (168), Expect = 1e-31
Identities = 161/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| |||||||| || |||||||| || |||||||| || || | ||||| | ||||||
Sbjct 188011 AGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 188070
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || || ||||| || | || |||||||| || | || ||||| |||
Sbjct 188071 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 188130
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || || ||||| || ||||||||| | |||||||| || ||||| ||
Sbjct 188131 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTT 188190
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| ||||| || || | ||||||
Sbjct 188191 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 188222
Score = 149 bits (164), Expect = 1e-30
Identities = 162/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || ||||| ||||| |||||||| || || | ||||| | ||||||
Sbjct 188239 AGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 188298
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || || ||||| || | || |||||||| || | || ||||| |||
Sbjct 188299 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 188358
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || || ||||||||| | || ||||| || ||||| ||
Sbjct 188359 TGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTT 188418
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || ||||| || || ||||| | |||||| ||
Sbjct 188419 TTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTT 188453
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| |||||||| || || || ||||| |||||||| ||||| | || || | |||||
Sbjct 183819 AGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCC 183878
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| || ||||| || | || |||||||| || | || ||||| |||
Sbjct 183879 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 183938
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || || || || || ||||||||| | ||||| || || ||||| |||
Sbjct 183939 TGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTC 183998
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| ||||| || || | ||||||
Sbjct 183999 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 184030
>seq619
Length=304156
Score = 167 bits (184), Expect = 5e-36
Identities = 166/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || |||||||| || |||||||| || |||| ||||| | ||||||
Sbjct 191801 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCT 191742
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||| ||||| || ||||| || | || ||||||||||||| ||||| || |||
Sbjct 191741 TCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 191682
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| |||||| |||||||| || ||||||||| | || ||||| || || || |||
Sbjct 191681 TGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTC 191622
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || |||||||| || || || | |||||| ||
Sbjct 191621 TTCCCAGTGAGAGTTTTCACGAAAATCTGCATCTT 191587
>seq1005
Length=223403
Score = 89.7 bits (98), Expect = 1e-12
Identities = 138/194 (71%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881
|| |||||||| || |||||||||||||||| | || ||| ||||||||| || |||
Sbjct 80751 GGTAGAGGAGGGCAGTCTGCTCTGCGTTTTGCTCGTCTAAGAATGGAAAAGAGACATAAC 80692
Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTAT---CAAAGACAACAAGTGT 139938
||| |||| ||||| || |||| ||| | ||| ||| | ||| |||| |||| |
Sbjct 80691 TACGTGAGGAAAGTCGCTGAGACCGCTGTCCAGCTCTTTGTGTCCAACGACA--AAGT-T 80635
Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998
||| | || || || ||||| || || || || || ||||| | || | |||
Sbjct 80634 AATGTGGCGGGAATGGTCTTGGCTGGCTCTGCTGATTTTAAGACTGAACTAAGCCAGTCT 80575
Query 139999 GACTTTTTTGACCC 140012
||| | ||||||||
Sbjct 80574 GACATGTTTGACCC 80561
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158883111148325
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |