Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1594 167 5e-36 seq619 167 5e-36 seq1005 89.7 1e-12 >seq1594 Length=294527 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| |||||||| || |||||||| || || | ||||| | |||||| Sbjct 184047 AGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 184106 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| || | || ||||| ||| Sbjct 184107 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 184166 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || |||||||| | |||||||| || ||||| ||| Sbjct 184167 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTC 184226 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 184227 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 184258 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || ||||| ||||||||||| || || || | ||||| | |||||| Sbjct 184275 AGGACAAGATGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCT 184334 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || | || |||||||| || | || ||||| ||| Sbjct 184335 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 184394 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| ||||| || |||||||| | ||| ||||| || ||||| || Sbjct 184395 TGGATTTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTT 184454 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| ||||| | |||||| || Sbjct 184455 TTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 184489 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 188011 AGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 188070 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || | || |||||||| || | || ||||| ||| Sbjct 188071 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 188130 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || ||||| || ||||||||| | |||||||| || ||||| || Sbjct 188131 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTT 188190 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 188191 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 188222 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 188239 AGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 188298 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || | || |||||||| || | || ||||| ||| Sbjct 188299 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 188358 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | || ||||| || ||||| || Sbjct 188359 TGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTT 188418 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| || || ||||| | |||||| || Sbjct 188419 TTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTT 188453 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || || || ||||| |||||||| ||||| | || || | ||||| Sbjct 183819 AGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCC 183878 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| || | || ||||| ||| Sbjct 183879 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 183938 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || || || ||||||||| | ||||| || || ||||| ||| Sbjct 183939 TGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTC 183998 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 183999 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 184030 >seq619 Length=304156 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || |||| ||||| | |||||| Sbjct 191801 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCT 191742 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || ||||| || | || ||||||||||||| ||||| || ||| Sbjct 191741 TCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 191682 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| |||||||| || ||||||||| | || ||||| || || || ||| Sbjct 191681 TGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTC 191622 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || |||||||| || || || | |||||| || Sbjct 191621 TTCCCAGTGAGAGTTTTCACGAAAATCTGCATCTT 191587 >seq1005 Length=223403 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || |||||||| || |||||||||||||||| | || ||| ||||||||| || ||| Sbjct 80751 GGTAGAGGAGGGCAGTCTGCTCTGCGTTTTGCTCGTCTAAGAATGGAAAAGAGACATAAC 80692 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTAT---CAAAGACAACAAGTGT 139938 ||| |||| ||||| || |||| ||| | ||| ||| | ||| |||| |||| | Sbjct 80691 TACGTGAGGAAAGTCGCTGAGACCGCTGTCCAGCTCTTTGTGTCCAACGACA--AAGT-T 80635 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 ||| | || || || ||||| || || || || || ||||| | || | ||| Sbjct 80634 AATGTGGCGGGAATGGTCTTGGCTGGCTCTGCTGATTTTAAGACTGAACTAAGCCAGTCT 80575 Query 139999 GACTTTTTTGACCC 140012 ||| | |||||||| Sbjct 80574 GACATGTTTGACCC 80561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158883111148325