Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1594 102 6e-17 seq619 102 6e-17 >seq1594 Length=294527 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || |||||||| ||| Sbjct 184030 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 183971 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | |||| | || || || || | || || || || Sbjct 183970 GACACCATTGAGAATGTCAAGGCCAAAA-TCCAGGATAAGGAGGGCATCCCCCCTGACCA 183912 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||||||||| || ||||| || | |||||| | ||||||||| Sbjct 183911 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGATTACAA 183852 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| || || Sbjct 183851 CATCCAGAAAGAATCTAC 183834 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || ||||||||||| || ||||| ||||| || || || || || Sbjct 188453 AAGATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTTGAGGTGGAGCCC 188394 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| |||| | || || || || || || | || || || Sbjct 188393 AGTGACACCATTGAGAATGTTAAGGC-CAAGATCCAGGATAAGGAGGGCATCCCCCCTGA 188335 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || |||||||| || || |||||||| | ||||| | || || Sbjct 188334 CCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 188275 Query 23787 CAACATACAAAAAGAGTCCACA 23808 |||||| || ||||| |||||| Sbjct 188274 CAACATCCAGAAAGAATCCACA 188253 >seq619 Length=304156 Score = 102 bits (112), Expect = 6e-17 Identities = 145/203 (71%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 23606 TTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 ||||| |||||||||||||| ||||| ||||| || || || || || || || || || Sbjct 191584 TTAAAGATGCAGATTTTCGTGAAAACTCTCACTGGGAAGACCATTACCCTGGAGGTGGAG 191643 Query 23665 TCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 ||| ||||| |||| | | || ||| ||| || |||||||| | || || Sbjct 191644 CCCAGTGACACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCT 191703 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 || || ||| | | || ||||| |||||||| |||||||| | ||||| | || Sbjct 191704 GACCAGCAGAGACTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGAC 191763 Query 23785 TACAACATACAAAAAGAGTCCAC 23807 |||||||| || || |||||||| Sbjct 191764 TACAACATCCAGAAGGAGTCCAC 191786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337935016597340