Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq157 136 3e-27 seq3511 93.3 3e-14 >seq157 Length=512728 Score = 136 bits (150), Expect = 3e-27 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || || | ||| || |||||||| ||||| || | ||||||||||||||| || ||| Sbjct 348227 AGTCCCGTAATGTGTGCAATCATGTAGGTGAGAAGTGCGTAGCTGGCGATGTTGAAAGGC 348168 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| | || | |||||| ||||| || || ||||| ||||||| Sbjct 348167 ACGCCCAGACCCATGTCGGCGGAGCGCTGGTACAGCTGACAAGACAGCTCCCCGTCGCAG 348108 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGA 29876 ||||| |||||||| | ||| ||||| || || || ||||||| Sbjct 348107 ACGTAGAACTGACAGAGGGCGTGGCAGGGGGGCAGCGCCATGA 348065 Score = 120 bits (132), Expect = 2e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||||||| ||||| || ||||| |||||||| || ||||| ||||| | |||| Sbjct 347305 AAGTGCCTCCATTGGAAACCATACACAGGTCCCAGATCCCCCTCCTCCCTCTCTGTGAAG 347246 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||| ||||| | ||| |||||||| ||||||||||| || || ||||| Sbjct 347245 CCCAGGTTGTCCAGGAAGTCACGGGACCCGTTGGCATCCCAGATCTTCACTCCTTTCTCT 347186 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || ||||| |||| ||||| || || Sbjct 347185 GACAGCTCCTTGGCATTTGTTGATCC 347160 >seq3511 Length=43870 Score = 93.3 bits (102), Expect = 3e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 114289 CTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 114348 ||||||||||||||| | ||| | |||| || |||| || || ||||| || ||||| || Sbjct 34930 CTCCCTGCTGAGGACGATGTTGATCCTGCCTTTCAGTGGCCTGTTCTTCTCTGGGATTGA 34989 Query 114349 GAACCAAGTCTTTCTACCCATTATCACCACGTTC 114382 |||||| ||||| || ||||| |||||||| ||| Sbjct 34990 GAACCAGGTCTTCCTGCCCATGATCACCACATTC 35023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406073578186030