Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq574 306 3e-78 seq1211 300 1e-76 seq157 150 1e-31 >seq574 Length=313223 Score = 306 bits (338), Expect = 3e-78 Identities = 297/382 (78%), Gaps = 0/382 (0%) Strand=Plus/Plus Query 68936 AGTTCCAGAGTATCTGGCATTAGTGCGACAGAAGATGTCTGAATATAGTCACAACAGCTT 68995 || ||| || ||||||||| | ||| | || |||||||| |||| ||| | Sbjct 5338 AGATCCTGATTATCTGGCAGTGGTGTCAAAGTTTGTGTCTGAAAATAGATGCAAAGAAGT 5397 Query 68996 CCACCTACACAGTCCAGAGGGGTCCAAACTGACCATAGGACCCGTTGAGGACACAGAGTA 69055 || ||| ||||| ||| ||||||||||||| ||| | | |||||||||||||| Sbjct 5398 CCCTCTATGTTATCCAGTTGGGGCCAAACTGACCATTGGATCACTGGAGGACACAGAGTA 5457 Query 69056 TAAAGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGAC 69115 || ||||||||||||||||||||||||||||||||||||||| | |||| | Sbjct 5458 CAAGGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTATCTTCCCAAACTAACAAA 5517 Query 69116 GATGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGAT 69175 |||| |||| || || |||| | |||||| |||||| ||||||||||||||||||||| Sbjct 5518 GATGGAGGTTATTGGCTATGCAAAGGGAACAACATACCCATGTGACCAGCTTGTCCTGAT 5577 Query 69176 GACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAA 69235 |||||| ||||||||||||||||| |||| ||| ||||| ||||||||| |||||||| Sbjct 5578 GACCTGTGAGGACCAGAAGGTGTATGGCTTTGATGGAGATGAGCTGCATCTGGTGGCTTC 5637 Query 69236 CTGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCA 69295 || | | ||||||| ||| ||||||||| || |||||| |||||| ||||| || Sbjct 5638 CTCCCCGAGACAGATGGTCACAGAGGGAATAGCCGATTCTGCATCCCAGAGTTATTACCA 5697 Query 69296 TGGGGAGGCCTTCAAACATATG 69317 |||||||||||||||| | ||| Sbjct 5698 TGGGGAGGCCTTCAAAGACATG 5719 Score = 289 bits (320), Expect = 2e-73 Identities = 241/295 (82%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 69023 ACTGACCATAGGACCCGTTGAGGACACAGAGTATAAAGACAGGCCTGCAGTGGTGAACGG 69082 ||||||||| ||||| || ||||||||||||| || |||||| |||||||||||||| | Sbjct 36295 ACTGACCATTGGACCAGTGAAGGACACAGAGTACAAGGACAGGTCTGCAGTGGTGAACAG 36354 Query 69083 ATGGGGAAAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGTTATGTGACGGG 69142 |||||||||||||||| | |||| | | |||| |||| || || || || ||| Sbjct 36355 ATGGGGAAAGTTTTATCTTCCCAAACCAACAAAGATGGAGGTTATTGGCTACATGGAGGG 36414 Query 69143 AACTCCATACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAAGGTGTACGG 69202 |||| | |||| || |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 36415 AACTTCGTACCCATTTGACCAGCTTGTCCTGATGACCTGTGAGGACCAGAAGGTGTACGG 36474 Query 69203 CTATGACGGAGACGAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGGGGAAGAAGG 69262 || ||| ||||| || |||||| |||||||| | | |||||||||||| ||| || Sbjct 36475 CTTTGATGGAGAGGACCTGCATCTGGTGGCTTTCAGCCTGGATCAGATGTTCACAGAGGG 36534 Query 69263 AATAGCCTATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACATATG 69317 ||||||| |||| ||| ||||||| ||||||| ||| |||||||||||| | ||| Sbjct 36535 AATAGCCGATCCAGCACTCCAGAGTTATTATCGTGGTGAGGCCTTCAAAGACATG 36589 Score = 113 bits (124), Expect = 3e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 69317 GACCAAGGAGGACTGGGAGAAGGTGAGGCAGAGCCCTGCGGGAAAAAGGTTGGATGAGGA 69376 |||||| ||||||||| ||||||| |||| |||| | ||| ||||||||||| ||||| Sbjct 6344 GACCAAAGAGGACTGGTCGAAGGTGGAGCAGGGCCCCGTGGGGAAAAGGTTGGAAGAGGA 6403 Query 69377 GCATCATAAACTGGTGGTGTCTCAAAAATCTGCACTGCTGAGGAATCTCAGAATCAGCAG 69436 ||||| ||| ||||||| |||| ||| | | | |||| |||||||| ||||| ||| Sbjct 6404 GCATCGTAATCTGGTGGCTTCTCGCAAACCCGATTTCCTGAAGAATCTCAAAATCATCAG 6463 Query 69437 ACAAA 69441 ||||| Sbjct 6464 ACAAA 6468 Score = 104 bits (114), Expect = 2e-17 Identities = 104/134 (78%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 69317 GACCAAGGAGGACTGGGAGAAGGTGAGGCAGAGCCCTGCGGGAAAAAGGTTGGATGAGGA 69376 |||||| |||||||||||| ||||| || ||||||| ||||| ||| |||||||| | Sbjct 36668 GACCAAAGAGGACTGGGAGGCGGTGAAGCTGAGCCCTATGGGAACGAGGCTGGATGAGAA 36727 Query 69377 GCATCATAAACTGGTGGTGTCTCAAAAATCTGCACTGCTGAGGAATCTCAGAATCAGCAG 69436 ||||| | ||||||||| |||| ||||| | | ||| |||||||| ||||| ||| Sbjct 36728 GCATCGTCAACTGGTGGCTTCTCGCAAATCCACCATCCTGCAGAATCTCAAAATCATCAG 36787 Query 69437 ACA-AAATAGAGGT 69449 | | | | |||||| Sbjct 36788 ATATAGACAGAGGT 36801 >seq1211 Length=192523 Score = 300 bits (332), Expect = 1e-76 Identities = 258/319 (81%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 68999 CCTACACAGTCCAGAGGGGTCCAAACTGACCATAGGACCCGTTGAGGACACAGAGTATAA 69058 ||||| || ||||| ||| | ||||||||||||||| | || ||||||||||| || Sbjct 27670 CCTACCTAGACCAGATGGGGCTGTACTGACCATAGGACCACTGGAAGACACAGAGTACAA 27611 Query 69059 AGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGAT 69118 ||||||||| ||||||||||||||||||| ||||||||| | |||| | | ||| Sbjct 27610 GGACAGGCCTACAGTGGTGAACGGATGGGGGAAGTTTTATCTTCCCAACATAACAAAGAT 27551 Query 69119 GCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGAC 69178 | |||||||||| || ||| ||||||| | |||| |||||||||||||||| ||||||| Sbjct 27550 GAAGGTCATCGGCTACGTGGAGGGAACTTCGTACCCATGTGACCAGCTTGTCTTGATGAC 27491 Query 69179 CTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACTG 69238 ||| ||||| ||||||||||||||| ||| ||||| ||||||||| |||||||| | | Sbjct 27490 CTGTGAGGAAAAGAAGGTGTACGGCTTTGATGGAGAGGAGCTGCATCTGGTGGCTTTCAG 27431 Query 69239 TCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATGG 69298 |||||||||||| | | ||||||||| |||| ||| ||||||| ||||| |||| Sbjct 27430 CCTGGATCAGATGTTCACAAAGGGAATAGCCGATCCAGCACTCCAGAGTTATTACTATGG 27371 Query 69299 GGAGGCCTTCAAACATATG 69317 ||||||||||||| | ||| Sbjct 27370 GGAGGCCTTCAAAGACATG 27352 Score = 118 bits (130), Expect = 8e-22 Identities = 103/127 (81%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 69324 GAGGACTGGGAGAAGGTGAGGCAGAGCCCTGCGGGAAAAAGGTTGGATGAGGAGCATCAT 69383 |||||||||||| |||||| ||||||||||| ||| || | | || |||||||||||| | Sbjct 27266 GAGGACTGGGAGGAGGTGAAGCAGAGCCCTGTGGGGAAGATGCTGAATGAGGAGCATCGT 27207 Query 69384 AAACTGGTGGTGTCTCAAAAATCTGCACTGCTGAGGAATCTCAGAATCAGCAGAC-AAAA 69442 |||||||||| ||||| |||||||| | ||| || | || ||| || ||||| |||| Sbjct 27206 CAACTGGTGGTTTCTCACAAATCTGCTTTCCTGGAGATTTTCTGAACCATCAGACAAAAA 27147 Query 69443 TAGAGGT 69449 |||||| Sbjct 27146 CAGAGGT 27140 >seq157 Length=512728 Score = 150 bits (166), Expect = 1e-31 Identities = 134/168 (80%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||||||| |||||||||| || || |||||||||||||| || ||||| |||||||| || Sbjct 347327 CATGTCCTTGTACTCTGCACCAAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGATC 347268 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 ||||| ||||| | ||||||| ||||||| ||||| | ||| |||||||| || Sbjct 347267 CCCCTCCTCCCTCTCTGTGAAGCCCAGGTTGTCCAGGAAGTCACGGGACCCGTTGGCATC 347208 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||||||||| || || ||||| || ||||| |||| ||||| || || Sbjct 347207 CCAGATCTTCACTCCTTTCTCTGACAGCTCCTTGGCATTTGTTGATCC 347160 Score = 136 bits (150), Expect = 3e-27 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || || | ||| || |||||||| ||||| || | ||||||||||||||| || || Sbjct 348227 AGTCCCGTAATGTGTGCAATCATGTAGGTGAGAAGTGCGTAGCTGGCGATGTTGAAAGGC 348168 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| | || | |||||| |||||||| || ||||| || |||| Sbjct 348167 ACGCCCAGACCCATGTCGGCGGAGCGCTGGTACAGCTGACAAGACAGCTCCCCGTCGCAG 348108 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGA 27370 ||||| |||||||| | ||||||||| || || || ||||||| Sbjct 348107 ACGTAGAACTGACAGAGGGCGTGGCAGGGGGGCAGCGCCATGA 348065 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 27380 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 27439 ||||||||||||||||||||| |||||| || | |||||| ||||| ||| ||||| || Sbjct 347979 CTTTGGGGTTCCAGGCGCACATGATGATCCGTCGGTCTTCCGGGTTTTTCTTGATGGTGT 347920 Query 27440 CCACGGCGTTTTGCAGCTGATCCACCCC 27467 | | | |||||| ||||| || || || Sbjct 347919 CGATGATGTTTTGTAGCTGGTCGACACC 347892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369425666504255