Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq406 383 2e-101 seq541 87.8 2e-12 >seq406 Length=364117 Score = 383 bits (424), Expect = 2e-101 Identities = 1243/1917 (65%), Gaps = 25/1917 (1%) Strand=Plus/Minus Query 77106 AGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 77165 ||||| ||||| || || || || || ||||| |||| || || || ||||| || || Sbjct 267903 AGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTG 267844 Query 77166 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGC 77225 ||||| || | || | || || ||||| |||| || || || || || || || ||| Sbjct 267843 CTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGC 267784 Query 77226 ATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATAT 77285 || || |||| || | || || || | || ||| | ||| || || || || Sbjct 267783 ATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGC 267724 Query 77286 TTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTA 77345 ||||| ||||| || || | ||| ||||| | ||||| || || || || || Sbjct 267723 TTCCAGTCCCACAGGTCGGTCGGTGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTG 267664 Query 77346 CTAGCATATGATCCATTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAA 77402 || || || | || || || || || || |||| | || ||||| || Sbjct 267663 CTGATGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTG---CGGCGAGTTCGCAG 267607 Query 77403 CTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCT 77462 || || |||| || ||| || || || ||||| |||| | ||||| || ||| Sbjct 267606 CTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCT 267547 Query 77463 TCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCA 77522 || || || ||||||| | | || || |||||||| || | ||||| || || Sbjct 267546 TCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCG 267487 Query 77523 ATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTA 77582 || || || || || || | ||| ||||| | | ||||| || | || || ||||| Sbjct 267486 ATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCTTCGGGGACCGGGTAGTAATTG 267427 Query 77583 ATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGA 77642 ||||| || || || ||||| ||| | || | ||| || ||| || || Sbjct 267426 ATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTG 267367 Query 77643 AAATCAAATCTTCCATCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAA 77699 || || || | | ||| | || ||||||| | || || || || || || || Sbjct 267366 AAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAG 267307 Query 77700 ACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTG 77759 || || ||||| | | ||| || | | | ||| || || || || || |||||| Sbjct 267306 ACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCATTTG 267247 Query 77760 ATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAAC 77819 || |||||||| || || ||||||||||| | ||||| | |||||| || || || | Sbjct 267246 ATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAG 267187 Query 77820 GGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTA-GCTTTTAT 77878 || ||||||||||| |||| || ||||| || | | ||||| | || || || | Sbjct 267186 GGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGA-GCTGCTGCGCCTTCAC 267128 Query 77879 CATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCC 77938 || || | || || | |||||| || || ||| || || || ||||| Sbjct 267127 CACCCTCTTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCC 267068 Query 77939 CCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTC 77998 ||| || |||| ||||| || || | || |||||||| |||||||| | || Sbjct 267067 CCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCAAGGACCAGTC--CTGGTTG 267010 Query 77999 CTTA--ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTT 78056 ||| |||| ||||| || || || || ||||| | || || || |||| || | Sbjct 267009 CTTTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCT 266950 Query 78057 CTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGC 78116 || || || || |||||||| ||||| || || || || || || | | || | ||| Sbjct 266949 CTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGC 266890 Query 78117 CATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATAT 78176 || ||||| || || || || | | || |||| || || || ||||| || | || Sbjct 266889 CACGGTTCCAGGTACATGGCAAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAG 266830 Query 78177 CTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTT 78236 | || ||||| || |||||||||| ||| || | | ||||| || | || || || Sbjct 266829 CGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTG 266770 Query 78237 CCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCC 78296 || | ||| || ||||| | | || || || | | | || || || || || Sbjct 266769 CCGGCAATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCCCCAGCG 266710 Query 78297 ATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCC 78356 ||| || || || ||||| | |||| || |||||||| || || || ||||| ||| Sbjct 266709 GACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCC 266650 Query 78357 ATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAAT 78416 ||||| ||| || || ||||| |||| || | | || || || || || | Sbjct 266649 TTCATGGCAAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGG 266590 Query 78417 GTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGAT 78476 |||||||| || || || ||||| || || || || || ||||| || || || || | Sbjct 266589 GTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCAGCG 266530 Query 78477 TCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCA 78536 || ||||| | || || || |||| || | ||| | ||| ||||| || | || Sbjct 266529 TCAATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCG 266470 Query 78537 ACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAG 78596 || || || || |||| || ||| || |||| ||| || ||||| || || Sbjct 266469 GCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAACCGAAGAAG 266410 Query 78597 TTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTA 78656 ||||| || || ||||| |||||||| || ||||| || || |||| || | Sbjct 266409 TTGTAGGAGAAATCTCTGTCGTAAATGATGGAGGAATTGAGGCGGTCCTTGTTTTCCATG 266350 Query 78657 ACAATATCCATGACAGTAGTTGAA-ATAATAGGAGATCGTACACCATTTTT---AGGATT 78712 || || || | | | ||| | || || ||||| | | || || ||| || Sbjct 266349 ACGATGTCGA-GCGTCTCCTTGGAGATCATGGGAGAGTGG---CGTTTGTTCAGAGGGTT 266294 Query 78713 AACATAGTTAAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAG 78772 || ||| || | |||||||| || || || || | || || || |||||||| || Sbjct 266293 GACGTAGGCGAACAGGTCTTCCATCACCTCGCTGAACACCTTCTTGGTCTCCTTGTGCAG 266234 Query 78773 ATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGT 78832 || || || || || || || || || || || || || || |||| || || || Sbjct 266233 GTTGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTCGGGGTGTTTGGTCGTCAGGGT 266174 Query 78833 GGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCC 78892 ||| || || || ||||||| | || | ||| | || ||||| || | || | || Sbjct 266173 GGCCGCGATCTCCGCCGCTAGCGTGTCAAGCTCCACGGTGGTGACGCCGCTGTACAAGCC 266114 Query 78893 TTGAATAACTTTCATGGCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACA 78952 || || || ||||||| ||| | | ||||| ||||| || | ||||| || || || Sbjct 266113 CTGGATCACCTTCATGGTGATCTGAGCTGGATCCACAAAGTCCGGGTTCAGGCCGTAGCA 266054 Query 78953 TAATTTTCTA-ATACGAGATGTGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 || |||| || || || ||||||||||| || || || ||||| || |||| Sbjct 266053 -AAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGACGCGCTCCTGGCGCCCAT 265998 >seq541 Length=321934 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || || || || | || ||||| || || || ||||| || || ||||| || ||| Sbjct 162375 GTGCCGGCGTTGAACAGGGTAGGAGAGGCGTGAGTGAACCACTTCTCTGAAAGCAGGTTG 162434 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||||| ||||| || ||||| || ||||| || || || || | ||||| | Sbjct 162435 TATGTTTCAACAGCTGCATCAATGTCTTCTTTGTGAATCCCGACTGCCACTCTCATCAGC 162494 Query 78519 ATATGCTGAGGTCTTTCA 78536 || ||||| ||||| ||| Sbjct 162495 ATGTGCTGGGGTCTCTCA 162512 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 ||||| || || ||||| || | ||||| |||||||||||||| |||||| |||| | Sbjct 160858 ATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTCTTCCTG 160917 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATA 77852 ||||| | |||||| || || || |||| || || || || |||| || ||||| || Sbjct 160918 TTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGCGACTCGATGATG 160977 Query 77853 GATTTCCAGA 77862 | | ||||| Sbjct 160978 GCGTACCAGA 160987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694511587767200