Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq406 385 7e-102 seq541 96.9 5e-15 >seq406 Length=364117 Score = 385 bits (426), Expect = 7e-102 Identities = 1265/1953 (65%), Gaps = 25/1953 (1%) Strand=Plus/Minus Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 ||||| ||||| || ||||||| | ||| || | | | ||||| ||||| || Sbjct 267948 TTCTTCATCTCCTCGTTCCACAGGCCACGCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTG 267889 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 || || || || ||||| |||| || || || ||||| || || ||||| || | || Sbjct 267888 ACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCG 267829 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 267828 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGC 267769 Query 75836 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 75895 | || || || | || ||| | ||| || || || || ||||| ||||| || Sbjct 267768 AGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 267709 Query 75896 TCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCA 75955 || | ||| ||||| | ||||| || || || || ||||| || || Sbjct 267708 TCGGTCGGTGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGATGGGCGAGCCC 267649 Query 75956 TTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCG 76015 | || || ||||| | ||| || | | || |||||||| || ||||| | || || Sbjct 267648 TCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGTTCGCAGCTGGCCTCCAGGGCGGCG 267589 Query 76016 TAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGA 76075 | || || || ||||| |||| | || || || ||||| | || || || ||| Sbjct 267588 TGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCTTCGGGGCTTTCGAACGGA 267529 Query 76076 TAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGT 76135 | | | || || || ||||| || || ||||| || || || || || || || || Sbjct 267528 TGTCGCATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGG 267469 Query 76136 CTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTG 76195 | ||| ||||| | || ||||| || | ||||| ||||| || || || || || ||| Sbjct 267468 CGCTTGTTGGACGTCTCGGCTTCGGGGACCGGGTAGTAATTGATGTCGATGATCTTGTTG 267409 Query 76196 AGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCT 76255 || ||| | || | ||| || ||| || || || || || | | ||| Sbjct 267408 AGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCT 267349 Query 76256 ATC---ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT--TAG 76310 | || |||| || || || || || || || || || ||||| ||||| | | | Sbjct 267348 GGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTG 267289 Query 76311 CATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTT 76370 | ||| || | | | ||| ||||| || || || || ||||| || || || || | Sbjct 267288 C--TGGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCT 267231 Query 76371 GTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAA 76430 | ||||||||||| |||| || | |||||| || || | | || || || ||||| Sbjct 267230 GCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGG 267171 Query 76431 TCTGTGATTCGATAATAGATTTCCAGACGACTCTA-GCTTTTATTATAGATTTGTA--TC 76487 |||| || ||||| || | | ||||| | || || || | | || || Sbjct 267170 TCTGGGACTCGATGATGGCGTACCAGA-GCTGCTGCGCCTTCACCACCCTCTTCACCCTC 267112 Query 76488 GCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCA 76547 |||| ||| ||||| || || | | || || || |||||||| || |||| Sbjct 267111 CCTTCCTTCT--CATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCA 267054 Query 76548 AACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT--AACCCGTTT 76605 |||||||| || | ||||||||||| ||||| | || || ||| || | || Sbjct 267053 GCCCAGGACACTCGCTGGGACACATCAAGGACCAGT--CCTGGTTGCTTTCCACTCTCTT 266996 Query 76606 CATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATT 76665 ||| || || || || ||||| | || || || |||| || ||| | || || || Sbjct 266995 CATGAACAGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTT 266936 Query 76666 TCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATA 76725 |||||| ||||| || || || ||||| || | | || | ||||| ||||| || || Sbjct 266935 TCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGTTCCAGGTA 266876 Query 76726 TATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATT 76785 || || | | || |||| || || || ||||| || | || | || ||||| || Sbjct 266875 CATGGCAAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTT 266816 Query 76786 ATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACT 76845 |||||||||| ||| || | | ||||| || | || || || || | ||| || || Sbjct 266815 GTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCAATGTAGCT 266756 Query 76846 TCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAG 76905 ||| | || || || | | | ||| || || || || || || || || Sbjct 266755 TCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCCCCAGCGGACTTGGAAATGAG 266696 Query 76906 AGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAG 76965 || || | |||| ||||| |||||||| || || || || ||| ||||| ||| || Sbjct 266695 CGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCAAGCAG 266636 Query 76966 AAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATG 77025 || ||||| |||| || | | || || || || || | || ||||| || || Sbjct 266635 GAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTG 266576 Query 77026 AGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTG 77085 |||||||| || || || || || ||||| || || || | || || || || | Sbjct 266575 GGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCAGCGTCAATGTCTCGCCC 266516 Query 77086 ATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATT 77145 || || || || | || | ||| | ||| ||||| || || || | || || Sbjct 266515 GTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTT 266456 Query 77146 TATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 77205 || |||| || ||| || |||| ||| || ||||| || ||||||| || || || Sbjct 266455 GATCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAACCGAAGAAGTTGTAGGAGAAATC 266396 Query 77206 TCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCATGAC 77265 ||| |||||||| || ||||| || |||||| | || | || || || || Sbjct 266395 TCTGTCGTAAATGATGGAGGAATTGAGGCGGTCCTTGTTTTCCATGACGATGTC---GAG 266339 Query 77266 AGT---GGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATAA 77322 || | || || || ||||| | | || ||| || || ||| || | Sbjct 266338 CGTCTCCTTGGAGATCATGGGAGAGTGGCGTTTGTTCAGAGGGTTGACGTAGGCGAACAG 266279 Query 77323 GTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTAT 77382 ||||||||| || ||||| || | || || || |||||||| || || || ||||| || Sbjct 266278 GTCTTCCATCACCTCGCTGAACACCTTCTTGGTCTCCTTGTGCAGGTTGGAGACGGCAAT 266219 Query 77383 TCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGC 77442 || || || || || || ||||| || |||| || || |||||| || || || || Sbjct 266218 CCTCGCGGCCAGGATGGCGTAGTCGGGGTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGC 266159 Query 77443 CGCTAAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCAT 77502 ||||| || || | || | || || || ||| | || | || || || || ||||| Sbjct 266158 CGCTAGCGTGTCAAGCTCCACGGTGGTGACGCCGCTGTACAAGCCCTGGATCACCTTCAT 266099 Query 77503 GGCTATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCT-AATAC 77561 || || | ||||| ||||| || | ||||| || || || || |||| || | Sbjct 266098 GGTGATCTGAGCTGGATCCACAAAGTCCGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGC 266040 Query 77562 GAGATGTGATTTTATCAAACATGACATTCTCCT 77594 | || ||||||||||| |||||||| ||||| Sbjct 266039 GGGAGGTGATTTTATCGAACATGACGCGCTCCT 266007 >seq541 Length=321934 Score = 96.9 bits (106), Expect = 5e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || || || |||| |||||||| || ||||||||||| || || ||||| || ||| Sbjct 162375 GTGCCGGCGTTGAACAGGGTAGGAGAGGCGTGAGTGAACCACTTCTCTGAAAGCAGGTTG 162434 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 |||||||||| | |||| || || || || ||||| || || || || | ||||| | Sbjct 162435 TATGTTTCAACAGCTGCATCAATGTCTTCTTTGTGAATCCCGACTGCCACTCTCATCAGC 162494 Query 77114 ATATGCTGAGGTC 77126 || ||||| |||| Sbjct 162495 ATGTGCTGGGGTC 162507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712773054033600