Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1594 145 2e-29 seq619 111 4e-19 >seq1594 Length=294527 Score = 145 bits (160), Expect = 2e-29 Identities = 168/225 (75%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| ||||| || || ||||| ||||| |||||||||||||||| | ||| Sbjct 183809 CCTCAGACGGAGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAATCGGACAGAGT 183868 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||| || || || ||||| ||||| |||||||||||||| | | ||| || Sbjct 183869 GCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 183928 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||||| || || ||||| |||||| |||| | | |||| ||| ||| ||||| Sbjct 183929 CTCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACTTC 183985 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||| ||||| ||||||| |||||| Sbjct 183986 CAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 184030 Score = 134 bits (148), Expect = 3e-26 Identities = 167/227 (74%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | |||||||||||| || || || ||||||||||| ||||| || | | || Sbjct 184265 CCTCAGACGGAGGACAAGATGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGT 184324 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | |||||||| || ||||| ||||| ||||| |||||||||||||| | | ||| Sbjct 184325 GCGGCCATCTTCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATG 184382 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 || ||||| || || ||||| |||||| |||| | | |||| || || || Sbjct 184383 CCCTCCTTATCCTGGATTTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCC 184442 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || |||||||| ||||| ||||| || |||| |||||| || Sbjct 184443 AGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 184489 Score = 131 bits (144), Expect = 4e-25 Identities = 167/227 (74%), Gaps = 10/227 (4%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| ||||| || || || ||||| || ||||||||||| || | | || Sbjct 188001 CCTCAGACGGAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 188060 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | |||||||| || ||||| ||||| ||||| |||||||||||||| | | ||| Sbjct 188061 GCGGCCATCTTCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATG 188118 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACT 152057 || ||||| || || ||||| ||||| |||| | | |||| ||| ||| || Sbjct 188119 CCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCAACC 188175 Query 152058 TCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| ||||| ||||| ||||||| |||||| Sbjct 188176 TCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 188222 Score = 131 bits (144), Expect = 4e-25 Identities = 169/230 (73%), Gaps = 10/230 (4%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| || || || || || ||||| ||||||||||| || | | || Sbjct 188229 CCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGT 188288 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | |||||||| || ||||| ||||| ||||| |||||||||||||| | | ||| Sbjct 188289 GCGGCCATCTTCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATG 188346 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACT 152057 || ||||| || || || || || ||| |||| | | |||| ||| ||| || Sbjct 188347 CCCTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTC---ACTGGGCTCCACC 188403 Query 152058 TCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || |||||||| ||||| || ||||| |||| |||||| || Sbjct 188404 TCAAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTT 188453 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| || ||||| || ||||| || ||||||||||| || | | || Sbjct 184037 CCTGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 184096 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| |||||||||||||| | | ||| || Sbjct 184097 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 184156 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || || || || ||||| |||| | | |||| ||| || || || Sbjct 184157 CTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAG 184216 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| ||||| ||||| ||||||| |||||| Sbjct 184217 GGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 184258 >seq619 Length=304156 Score = 111 bits (122), Expect = 4e-19 Identities = 162/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| || || || || || ||||| || ||||||||||| || | | || Sbjct 191811 CCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGT 191752 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || ||| || || ||||| || ||||||||||| | | || || Sbjct 191751 GCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCC 191692 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||| || || ||||| ||| || || |||| | | |||| ||| ||| || || Sbjct 191691 TTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCCACCTC 191635 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || || |||||||| |||||||| | |||||| || Sbjct 191634 CAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCATCTT 191587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153553147828455