Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq619 136 3e-27
seq1594 134 1e-26
>seq619
Length=304156
Score = 136 bits (150), Expect = 3e-27
Identities = 169/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169
||| || ||||| | | ||||||||| || ||| |||||| ||||||||||| || |
Sbjct 191817 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 191758
Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229
|| ||| | || |||||||| || || |||||||||| | |||||| || | |||
Sbjct 191757 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGG 191698
Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCA 44288
| ||||| || ||| ||||| ||| | | |||| | |||||||| || ||||
Sbjct 191697 AATGCCTTCTTTATCCTGAATCTT-TGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCA 191639
Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||| ||||| ||||| || ||||| || |||||||| || |||||
Sbjct 191638 CCTCCAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCAT 191590
>seq1594
Length=294527
Score = 134 bits (148), Expect = 1e-26
Identities = 158/211 (75%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
||||||||||| ||| |||||| ||||||||||| || | || ||| | || |||
Sbjct 184050 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 184109
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || |||||||||| | |||||| || | || | || ||||| |||
Sbjct 184110 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 184169
Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| || | | |||| | ||||||||| || || ||||||| || || |||||
Sbjct 184170 ATCTT-GGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTT 184228
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|| ||||||||||| |||||||| ||||||
Sbjct 184229 GCCGGTGAGGGTCTTGACGAAGATCTGCATG 184259
Score = 122 bits (134), Expect = 6e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || ||||| | | || ||||| || ||| |||||| ||||||||||| || | |
Sbjct 187996 CCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 188055
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| ||| | || ||||||||||| ||||||||||||| | |||||| || | ||
Sbjct 188056 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 188115
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289
| || ||||| ||| || || || | | |||| | |||||||| || || ||
Sbjct 188116 ATGCCCTCCTTATCCTGGAT-TTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAAC 188174
Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
||||| || || || || || ||||||||||| |||||||| ||||||
Sbjct 188175 CTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 188223
Score = 120 bits (132), Expect = 2e-22
Identities = 168/233 (72%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || ||||| | | || || || || ||| || |||||||| ||||| ||
Sbjct 184256 CATGCCACCCCTCAGACGGAGGACAAGATGGAGGGTGGATTCTTTTTGGATATTGTAGTC 184315
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || ||| | || ||||||||||| ||||||||||||| | |||||| || |
Sbjct 184316 AGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGG 184375
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285
|| | || ||||| ||| || || |||| | |||| | ||||||||| || ||
Sbjct 184376 GGGGATGCCCTCCTTATCCTGGAT-TTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGTT 184434
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
||||||||| || || || || || ||||||||||| || ||||| ||||||
Sbjct 184435 CCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCATG 184487
Score = 111 bits (122), Expect = 1e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| || ||| || || ||||||||||| || | || ||| | || |||
Sbjct 188242 ACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 188301
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||||||||||| | |||||| || | || | || ||||| |||
Sbjct 188302 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 188361
Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| || | || ||| | |||||||| || |||||||| | || || || ||
Sbjct 188362 ATCTT-GGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTT 188420
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| |||||||| ||||| ||||| |||||
Sbjct 188421 GCCGGTGAGGGTTTTCACAAAGATCTGCAT 188450
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || ||||| | | || ||||| || || || || ||||||||||||||||
Sbjct 183804 CCACCCCTCAGACGGAGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAATCGGAC 183863
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| ||| | || ||||||||||| ||||||||||||| | |||||| || | ||
Sbjct 183864 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 183923
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290
| || ||||| ||| || || ||| | | | |||||||| || || ||
Sbjct 183924 ATGCCCTCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACT 183983
Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|||| || || ||||| || ||||||||||| |||||||| ||||||
Sbjct 183984 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 184031
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359910966430785
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |