Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq102 178 2e-39 seq644 118 2e-21 seq1324 107 3e-18 >seq102 Length=683427 Score = 178 bits (196), Expect = 2e-39 Identities = 207/278 (74%), Gaps = 1/278 (0%) Strand=Plus/Minus Query 8310 CCTTGA-CGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368 |||||| ||||| | || || || ||| | | ||| | |||||||| | || || Sbjct 618431 CCTTGAACGTTGTTGCAAACCAGCCTCTGCAGGGAGGCGGTGTTGACGATGTCAAAGCCG 618372 Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428 || || || ||||||||||||||||||||| | || ||||| ||| ||| |||| Sbjct 618371 ACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCTGGCGAGCAAATGGGATTCCCCATC 618312 Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488 ||||||||||||||||| |||||||||| ||| | || |||| || || |||||||| Sbjct 618311 AGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACCATCGTCTCCCCAAAAATGGCGTTT 618252 Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAA 8548 || |||||||| ||||| | | |||| ||| ||||||||||| |||||||| ||||| Sbjct 618251 GGCCGGGGCTTCTCCACGAGCAGGCCGGGGTAGAGCTCCACAGCGTCGACGTCACCGTAC 618192 Query 8549 AGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || | ||| ||| || || || || |||||||| Sbjct 618191 AGCTCTTCCAGTATGGCGGCCATTTCTTTGTCTCCTGT 618154 Score = 129 bits (142), Expect = 8e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| |||| ||||| || ||| |||||| ||| ||||| || Sbjct 616837 TCACCAATAAGGATGAGCCGAGAAGTCTGAAAGAGTCTTTCGTCATCCCAGTCTGGGTGA 616778 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| |||| ||| || ||||||| |||||| || | ||||||||| |||||||||||| Sbjct 616777 ACTTCCTTCAAAACGTCACACACCCGGTTGTGCTCACGGAGCCAGATGGTGGCGTACATC 616718 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGC 9392 ||||| || || ||||| || || ||||| || || ||||| Sbjct 616717 ATGAGGCCTGGGACCAGACCGAACGCCTCGTGGCCAACAGC 616677 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 9905 AAGTCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTT 9964 || |||||| ||| || | ||| ||||| || || ||||| ||||| || | Sbjct 615877 AACTCACCTACGACTCCCATAGGGGTTGGGCAGTCCGCCGGAACTGGAGGAAGGGCACGA 615818 Query 9965 GCGTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAT 10024 | ||| ||||| || ||||| | |||||||||||| |||| | |||||||||||||| Sbjct 615817 GTGTAGTAGGATAGGTTGGAATAGGCTTCCCAGCTTTTGTATCCATAGTCCGCGTTGTAA 615758 Query 10025 ATGGGAGGGCTGTCAATCAAATCGGATC 10052 | ||||| |||||||||| || ||||| Sbjct 615757 GTAGGAGGACTGTCAATCATATGGGATC 615730 >seq644 Length=298419 Score = 118 bits (130), Expect = 2e-21 Identities = 175/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||||| |||| ||| |||||| || || | ||| | | |||| ||| | Sbjct 213420 GGACACCACTTGGTGTTCAGACAGACCAGTTTCTTCAGAGTCGATGTTTTGATGATGTTG 213479 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||| || || |||||||||||||||||||||||| | || ||| |||| ||| Sbjct 213480 AAGCCCGTCTCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCTGGAGAGTTGATGGGATTC 213539 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 | | |||||||| |||||||| || || |||| ||| | |||||||| ||||| ||| Sbjct 213540 CCAAGCAGGCCTTTCAGGGAGAAAGGGGCTCCCATCTCAACCATGCTCTCTCCGAATATG 213599 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 | |||||| || | || |||| || || || | || | ||||| || || | ||| Sbjct 213600 GAGTTGGGGCGAGTTTTCTCCATCATGAGGCCTGGATAAAACTCCAGGGCGTCAATGTCA 213659 Query 8543 CCGTAAAG 8550 || || || Sbjct 213660 CCATAGAG 213667 Score = 116 bits (128), Expect = 5e-21 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || ||||||||||||| ||||||||||| || ||||||||| ||| |||||||| Sbjct 220012 CCAATAATGATGAGTCTGGTGGTCTGGAAAAGCTGCTCGTCATCCCAGGTCGGATGTTCA 220071 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 ||||| | || ||||||| |||||| ||||| |||||||| ||||||||||| || Sbjct 220072 CCCTTCAGGATGTCACACACCCGGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATGGTG 220131 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGA 9388 || || || || || || || | || || |||| Sbjct 220132 AGGCCTGGGACAAGTCCGAACACTTCCTGTCCGA 220165 >seq1324 Length=178734 Score = 107 bits (118), Expect = 3e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 || ||||| |||| || || | || ||||| ||||||||||||||||| | |||||| Sbjct 71693 TTCACGATGTCGAAGCCGACCTTGCCTCCGAATGTGCTGGGCTTCCAGTATTCTGGGGAG 71634 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 || ||| ||| ||| ||||||||||||||| || ||||| |||| || | ||||| Sbjct 71633 CATATGGGGTTACCCAGGAGGCCTTTGAGGGAAAAGGGAGCGCCCATTTCCACCATGCTT 71574 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || ||||| || | || || | ||| |||| || || |||| ||| | || | | Sbjct 71573 TCTCCGAATATCGTCCCTGGTCGAGTCTTCTCCAGCAGTAACCCGGGGTAAAATTCAAGA 71514 Query 8531 GCCTCGA 8537 || |||| Sbjct 71513 GCGTCGA 71507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716714561819200