Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1594 134 1e-26 seq619 123 2e-23 >seq1594 Length=294527 Score = 134 bits (148), Expect = 1e-26 Identities = 165/223 (74%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || || || ||| ||||||||| ||||| ||||| ||||||||||| Sbjct 188005 AGACGGAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 188064 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| ||||| || ||||| | ||| ||||| | ||| | || |||| Sbjct 188065 CCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 188124 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820 || ||| |||||| ||| |||| | || ||||| || | ||| ||||||| Sbjct 188125 TTATCCTGGATTTTGGCCTT----GACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAG 188180 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || ||||| || || || ||||| ||||| ||||||||| Sbjct 188181 GGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 188223 Score = 131 bits (144), Expect = 2e-25 Identities = 164/223 (74%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| || || ||| ||||||||| ||||| ||||| || |||||||| Sbjct 184041 AGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGG 184100 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| ||||| | ||| | || |||| Sbjct 184101 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 184160 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820 || ||| ||| || ||| |||| | || |||||||| | ||| ||||||| Sbjct 184161 TTATCCTGGATCTTGGCCTT----GACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAG 184216 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || || || || ||||| ||||| ||||||||| Sbjct 184217 GGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 184259 Score = 123 bits (136), Expect = 2e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || ||| || || || || || ||||| || |||||||| Sbjct 184269 AGACGGAGGACAAGATGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGG 184328 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| ||||| || ||||| | ||| ||||| | ||| | || |||| Sbjct 184329 CCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 184388 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823 || ||| |||||| |||| ||| || | ||||||| | |||||||||| || Sbjct 184389 TTATCCTGGATTTTG-GCTTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGT 184447 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||| || || || ||||| || || ||||||||||| Sbjct 184448 GATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 184489 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 || ||||| ||||| || ||||| || ||||| | || || |||||||||||||| || Sbjct 183840 TCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAG 183899 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 ||||| | ||| ||||| | ||| | || |||||| ||| |||||| ||| | | Sbjct 183900 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTGACATTC 183959 Query 41792 GACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | ||||| || | ||| || |||| || || || || || || || ||||| ||| Sbjct 183960 TCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACG 184019 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 184020 AAGATCTGCATG 184031 >seq619 Length=304156 Score = 123 bits (136), Expect = 2e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| || || ||| ||||||||| ||||| ||||| || |||||||| Sbjct 191807 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGG 191748 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| || || ||||| | ||| ||||| | |||| || || Sbjct 191747 CCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCT 191688 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823 || ||| ||| | ||||| | ||| || | |||| || | ||||||||||| || Sbjct 191687 TTATCC-TGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGT 191629 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || || || || || |||||||||||||| || Sbjct 191628 AATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCATCTT 191587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462199374826000