Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq1594 134 1e-26
seq619 123 2e-23
>seq1594
Length=294527
Score = 134 bits (148), Expect = 1e-26
Identities = 165/223 (74%), Gaps = 8/223 (4%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | || || || || ||| ||||||||| ||||| ||||| |||||||||||
Sbjct 188005 AGACGGAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 188064
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || |||||||| ||||| || ||||| | ||| ||||| | ||| | || ||||
Sbjct 188065 CCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 188124
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820
|| ||| |||||| ||| |||| | || ||||| || | ||| |||||||
Sbjct 188125 TTATCCTGGATTTTGGCCTT----GACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAG 188180
Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || ||||| || || || ||||| ||||| |||||||||
Sbjct 188181 GGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 188223
Score = 131 bits (144), Expect = 2e-25
Identities = 164/223 (74%), Gaps = 8/223 (4%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| || || ||| ||||||||| ||||| ||||| || ||||||||
Sbjct 184041 AGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGG 184100
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| || || ||||| | ||| ||||| | ||| | || ||||
Sbjct 184101 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 184160
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820
|| ||| ||| || ||| |||| | || |||||||| | ||| |||||||
Sbjct 184161 TTATCCTGGATCTTGGCCTT----GACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAG 184216
Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || || || || || || ||||| ||||| |||||||||
Sbjct 184217 GGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 184259
Score = 123 bits (136), Expect = 2e-23
Identities = 162/222 (73%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | || ||||| || ||| || || || || || ||||| || ||||||||
Sbjct 184269 AGACGGAGGACAAGATGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGG 184328
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || |||||||| ||||| || ||||| | ||| ||||| | ||| | || ||||
Sbjct 184329 CCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 184388
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823
|| ||| |||||| |||| ||| || | ||||||| | |||||||||| ||
Sbjct 184389 TTATCCTGGATTTTG-GCTTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGT 184447
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| ||||| || || || ||||| || || |||||||||||
Sbjct 184448 GATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 184489
Score = 107 bits (118), Expect = 2e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731
|| ||||| ||||| || ||||| || ||||| | || || |||||||||||||| ||
Sbjct 183840 TCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAG 183899
Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791
||||| | ||| ||||| | ||| | || |||||| ||| |||||| ||| | |
Sbjct 183900 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTGACATTC 183959
Query 41792 GACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851
| ||||| || | ||| || |||| || || || || || || || ||||| |||
Sbjct 183960 TCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACG 184019
Query 41852 AAAATCTGCATG 41863
|| |||||||||
Sbjct 184020 AAGATCTGCATG 184031
>seq619
Length=304156
Score = 123 bits (136), Expect = 2e-23
Identities = 162/222 (73%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || | |||||| || || ||| ||||||||| ||||| ||||| || ||||||||
Sbjct 191807 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGG 191748
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||| ||||| || || ||||| | ||| ||||| | |||| || ||
Sbjct 191747 CCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCT 191688
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823
|| ||| ||| | ||||| | ||| || | |||| || | ||||||||||| ||
Sbjct 191687 TTATCC-TGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGT 191629
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || || || || || || |||||||||||||| ||
Sbjct 191628 AATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCATCTT 191587
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462199374826000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |