Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq12 138 1e-27 seq14 116 3e-21 >seq12 Length=26439574 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 |||||||| || | ||||||||||| || ||||| ||||||| |||||| || | || Sbjct 2383309 GAGCACCAGGTGGACGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATC 2383250 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||||||||| ||| | || |||||||||||||| | | |||||| || || Sbjct 2383249 TTCCAGCTGTTTGCCAGCAAAGATGAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATC 2383190 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| |||||| | | | ||||||| ||||||| |||| ||| ||||| Sbjct 2383189 CTGAATCTTTGCTTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGT 2383130 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 ||| || || | ||||| || || || ||||| || Sbjct 2383129 CTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 2383094 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||||| |||||| || | || |||||||||||||| Sbjct 2383521 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 2383462 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || |||||||||||||| | | |||||| || || |||||| ||| Sbjct 2383461 GCAAAGATCAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCCTGAATCTTTGCCTTC 2383402 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | ||||||| ||||||| |||| ||| |||||||| || || | ||| Sbjct 2383401 ACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTT 2383342 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 2383341 TTCACAAAAATCTGCAT 2383325 Score = 98.7 bits (108), Expect = 8e-16 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 |||||||| || | ||||||||||| || ||||| ||||||| |||||| || | || Sbjct 2383633 GAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATC 2383574 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061 |||||||||||||| ||| | || |||||||||||||| Sbjct 2383573 TTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTC 2383535 >seq14 Length=28338960 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | |||||| || | || |||||||| ||||| Sbjct 16346968 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 16346909 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| ||| | ||| ||||| || |||||| ||| Sbjct 16346908 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 16346849 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | ||||||| |||| ||| ||||| |||||||| | || Sbjct 16346848 ACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTC 16346789 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 16346788 TTGACGAAGATCTGCAT 16346772 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| || || || || || ||||| | ||||| || | ||||||||||||||||| Sbjct 16342741 GTGGATTCTTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCATCCTCCAGCTGTTTGCCA 16342682 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| ||| | ||| ||||| || ||| || ||| Sbjct 16342681 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTG 16342622 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| ||||||| |||| ||| ||||| |||||||| | ||| Sbjct 16342621 ACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTT 16342562 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 16342561 TTGACGAAGATCTGCAT 16342545 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| || ||||| || || ||||| | |||||| || | || |||||||| || || Sbjct 16346512 GTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 16346453 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| ||| | ||| ||||| || |||||| ||| Sbjct 16346452 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCTTTG 16346393 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | ||||||| |||| ||| ||||| |||||||| | || Sbjct 16346392 ACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTC 16346333 Query 21159 TTGACAAATATTTGCATTTT 21178 |||||||| || ||||| || Sbjct 16346332 TTGACAAAGATCTGCATGTT 16346313 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| || | ||||||||||| || ||||| ||||| | |||||| || | || Sbjct 16346756 GAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 16346697 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| || || ||| | || | ||||||||||| ||| | ||| ||||| || Sbjct 16346696 TTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTATC 16346637 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 ||| || || || | | | || |||| ||||||| |||| ||| ||||| Sbjct 16346636 CTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 16346577 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||||||| | || ||||| || || ||||| Sbjct 16346576 CTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 16346544 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| || | ||||||||||| || ||||| ||||| | ||| || || | || Sbjct 16342529 GAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATC 16342470 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| ||||| ||| | || || ||||||||||| ||| | ||| ||||| || Sbjct 16342469 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATC 16342410 Query 21083 GGCGATCTT 21091 |||||| Sbjct 16342409 CTGGATCTT 16342401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422244955085888