Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq14 145 8e-30 seq12 136 4e-27 seq21 132 5e-26 seq11 93.3 4e-14 >seq14 Length=28338960 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| ||||| ||||||||||||||| | || || || ||| Sbjct 16342545 ATGCAGATCTTCGTCAAAACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGT 16342604 Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| |||| | ||||| | || || |||||||||||| | ||||| Sbjct 16342605 GACACCATTGAGAACG-TCAAAGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCA 16342663 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || |||||||||||||| || | ||||||||| |||||||| Sbjct 16342664 GCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAGGATGGCCGCACCCTCTCTGACTACAA 16342723 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || |||| || || || || | || | ||||| ||| Sbjct 16342724 TATCCAGAAAGAATCCACCCTCCACCTTGTTCTCCGTCTCAGGGGTGGC 16342772 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||||||||||||| | || || || ||| | Sbjct 16346772 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGC 16346831 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | || || |||||||||||| | |||||| Sbjct 16346832 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 16346891 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||||| |||||||||| Sbjct 16346892 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 16346951 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || || || || | || | ||||| ||| Sbjct 16346952 ATCCAGAAGGAGTCCACCCTCCACCTTGTTCTCCGTCTTAGGGGTGGC 16346999 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || ||| Sbjct 16346544 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16346603 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| ||||| | || || |||||||||||| | ||||| Sbjct 16346604 GACACCATTGAGAACG-TCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCA 16346662 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || || |||||||| || | |||||||| ||||||||| Sbjct 16346663 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 16346722 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || || || || | || | ||||| || Sbjct 16346723 CATCCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTCAGGGGTGG 16346770 Score = 125 bits (138), Expect = 7e-24 Identities = 169/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || ||||| ||||||||||||||| | || || || | Sbjct 16346312 AAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCC 16346371 Query 40746 CACCGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || ||||| | || |||| |||| | || || | || || |||||||||||| | | Sbjct 16346372 CAGCGACACCATTGAGAACG-TCAAAGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTG 16346430 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| | || |||| || || || |||||||| || | |||||||| |||| Sbjct 16346431 ACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACT 16346490 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||| ||||| || || |||| || || || || | || ||||||| ||| Sbjct 16346491 ACAATATCCAAAAAGAATCCACCCTCCACCTTGTTCTCCGTCTGAGGGGTGGC 16346543 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || || |||||||||||| | |||||||| | || |||| || ||||| |||||||| Sbjct 16342410 GATAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAA 16342469 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || | ||||| || |||||||||||||||||||||| |||| || || Sbjct 16342470 GATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTTCA 16342519 Score = 89.7 bits (98), Expect = 5e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || ||||| ||||| ||||||||||||||| | || || || || Sbjct 16341163 AAGATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCC 16341222 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | ||||| | | | | |||||| || || | || || |||||||||||| | ||| Sbjct 16341223 AGCGACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGAC 16341282 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCT 40838 ||||| | || |||| || || || ||||| Sbjct 16341283 CAGCAGAGGCTGATCTTTGCCGGAAAGCAGCT 16341314 >seq12 Length=26439574 Score = 136 bits (150), Expect = 4e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| ||||| || || ||||||||| | || || || || Sbjct 2383094 AAGATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCC 2383153 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | | | | |||| | || | ||| |||| || ||||| ||||| | | || Sbjct 2383154 AGTGATACCATTGAGAACG-TGAAAGCAAAGATTCAGGATAAAGAAGGCATTCTTCCTGA 2383212 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| ||||||||| || |||||||||||||| || | |||||||| ||||| Sbjct 2383213 CCAGCAGAGACTCATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTA 2383272 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| |||| | || || ||| | || | ||||| ||| Sbjct 2383273 CAACATCCAGAAGGAGTCCACCGTCCACCTGGTGCTCCGTCTCAGGGGAGGC 2383324 Score = 125 bits (138), Expect = 7e-24 Identities = 153/205 (75%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| ||||| || || ||||||||| | || || || ||| Sbjct 2383325 ATGCAGATTTTTGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 2383384 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| ||| |||| || ||||| ||||| | | ||||| Sbjct 2383385 GATACCATTGAGAACG-TGAAGGCAAAGATTCAGGATAAAGAAGGCATTCTTCCTGACCA 2383443 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||| |||| || |||||||||||||| || | |||||||| |||||||| Sbjct 2383444 GCAGAGACTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAA 2383503 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 ||||||||||||| |||| | |||| Sbjct 2383504 CATCCAGAAGGAGTCCAC-CNGCAT 2383527 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| |||| |||| || |||||||||||||| || | |||||||| ||| Sbjct 2383535 GACCAGCAGAGACTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGAC 2383594 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||||| |||| || || || ||| | || | ||||| || Sbjct 2383595 TACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGTCTCAGGGGAGG 2383647 >seq21 Length=25773841 Score = 132 bits (146), Expect = 5e-26 Identities = 104/122 (85%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 |||||||||||||||| ||| | ||| |||||||| | |||| ||| |||||||| | Sbjct 1860199 AGGTGGACCTGTCCAAAGACCTGCAGC-ACTGGGAGTCCCTGAAGGACGACGAGCGCTAC 1860257 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1860258 TTCATCTCCCACGTGTTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCTG 1860317 Query 116804 GT 116805 || Sbjct 1860318 GT 1860319 Score = 129 bits (142), Expect = 6e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 ||||||||||||| ||||| ||||| ||||||| || || ||||||||||| || | Sbjct 1860790 TGGTGGCCTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCCATCTTCT 1860849 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| |||||||||||||| |||||||||||||||||| | | | Sbjct 1860850 GGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCCGAG 1860909 Query 117162 ACGAGG 117167 |||||| Sbjct 1860910 ACGAGG 1860915 Score = 107 bits (118), Expect = 2e-18 Identities = 95/117 (81%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| | ||||||||||||||| | ||||| |||| ||||||||||| || Sbjct 1860401 GGTGGAGCGCTTCACGCAGGAGGTGCAGGTGACGGAGGCCAGGTGTTTCTACGGCTTCCA 1860460 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| | || |||||| |||| ||| Sbjct 1860461 GATCGCCATGGAGAACATCCACTCTGAGATGTA--CAGCCTGCTCATCAACACCTAC 1860515 >seq11 Length=28875558 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| || ||||| ||||| || || ||||| | ||||| |||||| || || Sbjct 15203308 GGGGAGCGTCTTGTGGCTTTCGCAGCAGTGGAGGGGATTTTCTTCTCGGGCTCATTTGCT 15203367 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 || || | ||||| ||||| | ||||||||||| ||||| || | | |||||| ||| Sbjct 15203368 GCTATCTACTGGCTGAAGAAGAGAGGCCTCATGCCAGGCCTTACCTACTCCAACGAACTC 15203427 Query 117152 ATCTCCAGGGACGAGG 117167 || ||||||||||| Sbjct 15203428 ATTAGCAGGGACGAGG 15203443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515201373415680