Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq13 167 2e-36 seq14 111 1e-19 seq12 109 5e-19 >seq13 Length=33524197 Score = 167 bits (184), Expect = 2e-36 Identities = 468/706 (66%), Gaps = 22/706 (3%) Strand=Plus/Minus Query 133275 GTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATG 133334 ||| ||| |||| || ||||||||||| || ||||| || || | ||||||||||||| Sbjct 17856076 GTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATG 17856017 Query 133335 TACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTC 133394 ||||| || || ||| || ||||| | ||| || || || || ||| Sbjct 17856016 GGCGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTC 17855957 Query 133395 CAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGC 133454 ||||||||||| || || | | || | ||||| | | | || || | || Sbjct 17855956 CAGTCCCACAG---GTCGG-----TCGGCGTC-TTCTC--CCACAT-GTCGT---ACTGG 17855912 Query 133455 AAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCC 133514 | ||| ||| |||| || || | || ||||| || ||||| ||| | ||| Sbjct 17855911 AGAATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCG 17855852 Query 133515 AGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGTTGAC 133573 ||||||||||| ||||||| ||||| ||| ||||| || ||| || || ||||| Sbjct 17855851 AGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGAT-GTTGAG 17855793 Query 133574 GAACCTGGCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAAC 133632 | | ||| ||| ||| ||| | | | || || | || | || |||||||||| || Sbjct 17855792 CAGCTGGGCTTCGGGGCTTTCGAACGGG-TGCCGCATCAGGATGAAGGCGTCGGCCAGAC 17855734 Query 133633 CCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGG 133692 |||| | ||||| ||||| || | || || ||| | |||| | || | | Sbjct 17855733 CCTGGACGCCGATCCCGATCGGCCTGTGACGCTTGTTGGACGTCTCGGCTTCAGGGACCG 17855674 Query 133693 GATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTT 133752 | |||| ||||| |||||||||||||||||| || ||||| | || || | Sbjct 17855673 GGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGG 17855614 Query 133753 TCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATAC 133812 |||| |||| || ||| || | ||| |||| || |||||| ||| || Sbjct 17855613 CCAGCTTCTTGAAGTCGAAAGTCC--GCTCTGGCGT-GACGTACATGTTGAGGGCGATGG 17855557 Query 133813 TGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGCAGA 133872 ||| || || || |||||| ||| | || | | |||| || | ||| | ||||| Sbjct 17855556 AGGCCAGGTTGCAGACGGCCACCTCATCCTTGCTGGTGTACTCCACCACCTCCGTGCAGA 17855497 Query 133873 GGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCT 133932 | |||||||||||||| ||||||| || || || ||||| | |||||| |||| Sbjct 17855496 GATTGCTGCATTTGATCGTGCCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAAGCGTCCT 17855437 Query 133933 TGTATAGCATGTACGGCCCGCCGGTTTCGACGTTGGTCTCGACGAT 133978 |||| |||||||| ||| ||||||||| | || ||||| ||| Sbjct 17855436 TGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGAT 17855391 >seq14 Length=28338960 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || || ||||| || || ||||| || | ||||| |||||| ||||| Sbjct 16342748 GTGGAGGGTGGATTCTTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCATCCTCCAGCTG 16342689 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||| ||||| |||| || | |||||| || || || ||||||||||| || ||||| Sbjct 16342688 TTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTT 16342629 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||| || | || | |||||| || ||| ||||| | ||| | ||||||||||| Sbjct 16342628 GGCTTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGT 16342569 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || |||||||| Sbjct 16342568 GAGGGTTTTGACGAAGATCTGCAT 16342545 Score = 109 bits (120), Expect = 5e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || || |||||||| || ||||| || || ||||| ||| || ||||| Sbjct 16346519 GTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTG 16346460 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||| || |||| || | |||||| || || || ||||||||||| || || || Sbjct 16346459 CTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTT 16346400 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||| || | || | |||||| || ||| ||||| | ||| | ||||||||||| Sbjct 16346399 GGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGT 16346340 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||| ||||||||| Sbjct 16346339 GAGGGTCTTGACAAAGATCTGCATG 16346315 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| ||| || ||||| ||| || Sbjct 16346752 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 16346693 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| || |||| | | |||||| || || || ||||||||||| || Sbjct 16346692 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 16346633 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | || | |||||| || ||| ||||| | ||| | || ||| Sbjct 16346632 ATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 16346573 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || || || ||||||||| Sbjct 16346572 CCGGTGAGGGTCTTGACGAAGATCTGCATG 16346543 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| || ||||| ||| || ||||| Sbjct 16346975 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTG 16346916 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || || |||| || | |||||| || || || ||||||||||| || || || Sbjct 16346915 CTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTT 16346856 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||| || ||| ||||| | ||| | ||||||||||| Sbjct 16346855 GGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGT 16346796 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| Sbjct 16346795 GAGGGTCTTGACGAAGATCTGCAT 16346772 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| || |||| || | |||||| || || || ||||||||||| || Sbjct 16341314 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 16341255 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| || ||| ||||| | ||| | |||||| Sbjct 16341254 ATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTG 16341195 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || ||||| ||||| |||||||| Sbjct 16341194 CCGGTGAGGGTTTTCACAAAGATCTGCAT 16341166 >seq12 Length=26439574 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| || || ||||| ||| || Sbjct 2383306 CACCAGGTGGACGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTC 2383247 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| ||||| ||||||| | |||||| || ||| | ||||| || || || Sbjct 2383246 CAGCTGTTTGCCAGCAAAGATGAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCCTG 2383187 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| ||| ||| || | || | ||| || || ||| ||||| | ||| | || || Sbjct 2383186 AATCTTTGCTTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTT 2383127 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || ||||||||||| Sbjct 2383126 CCCAGTGAGGGTTTTCACGAAAATCTGCAT 2383097 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| || || ||||| ||| || |||||||| ||| Sbjct 2383521 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 2383462 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || | |||||| || ||| | ||||| || || || ||| ||| || Sbjct 2383461 GCAAAGATCAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCCTGAATCTTTGCCTTC 2383402 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| || || ||| ||||| | ||| | || || || || || ||| Sbjct 2383401 ACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTT 2383342 Query 118722 TTTACAAAAATCTGCATGGCT 118742 || ||||||||||||||| || Sbjct 2383341 TTCACAAAAATCTGCATGCCT 2383321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433815764731456