Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq14 122 1e-22 seq23 104 3e-17 seq25 102 9e-17 seq2 100 3e-16 seq17 89.7 6e-13 >seq14 Length=28338960 Score = 122 bits (134), Expect = 1e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || ||||| |||||||| |||| ||| || || | || || |||||||| || || || Sbjct 16346506 TCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAG 16346447 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || | ||||||||| | || | || |||||| ||| ||| || ||||| || Sbjct 16346446 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCTTTGACGTTC 16346387 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||||| | ||||| || | |||||||||||||| || || ||||| ||| Sbjct 16346386 TCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACA 16346327 Query 43173 AAGATTTGCATTTTT 43187 ||||| ||||| ||| Sbjct 16346326 AAGATCTGCATGTTT 16346312 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || || || |||||||| |||| || || || | || || ||||| || ||||| || Sbjct 16342735 TCTTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAAG 16342676 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || | ||||||||| | || | || |||||| ||| |||||| ||||| || Sbjct 16342675 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTGACGTTC 16342616 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| || | ||||| || | |||||||||||||| || || || || || Sbjct 16342615 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTTTTGACG 16342556 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 16342555 AAGATCTGCAT 16342545 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 26523234 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 26523175 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 26523174 TACTAACGAGGAATG 26523160 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | ||| || || | || || |||||||| || || || Sbjct 16346963 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 16346904 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | ||||||||| | || | || |||||| ||| ||| || || | | Sbjct 16346903 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATT 16346844 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||||| | ||||| || | |||||||||||||| || || ||||| || Sbjct 16346843 CTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGAC 16346784 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 16346783 GAAGATCTGCAT 16346772 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 26511824 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 26511765 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 26511764 TACTAACGAGGA 26511753 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || || || || || | ||||||||| | || | || |||||| ||| | Sbjct 16341314 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 16341255 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || |||| || | | |||||||| | ||||| || | |||||||||||| Sbjct 16341254 ATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTG 16341195 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || || || || |||||||| ||||| || Sbjct 16341194 CCGGTGAGGGTTTTCACAAAGATCTGCATCTT 16341163 >seq23 Length=18084596 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 6976960 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 6976901 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 6976900 CTATACTAACGAGGA 6976886 >seq25 Length=1457224 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 83778 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 83719 Query 60126 TACTACCGAGGATTGA 60141 ||||| |||||| ||| Sbjct 83718 TACTAACGAGGAATGA 83703 >seq2 Length=46286544 Score = 100 bits (110), Expect = 3e-16 Identities = 71/80 (89%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 60059 AAATTTT-CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 7139619 AAATATTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 7139678 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||||||||| |||||| Sbjct 7139679 CACCACTATACTAACGAGGA 7139698 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||| Sbjct 26649123 TTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 26649064 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 26649063 TATACTAACGAGGA 26649050 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || |||||||||||||||||||||||||| ||||| |||| ||||| ||||||| Sbjct 11329798 CTCCCCGTCAGGGAATCGAACCCTGGTCTCCCGCCTGACAAGCGGGGATACTTACCACTA 11329857 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 11329858 TACTAACGAGGA 11329869 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 26636986 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 26637045 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 26637046 TACTAACGAGGA 26637057 Score = 91.5 bits (100), Expect = 2e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || ||||||||||||| |||||||||||||||||| || | ||||| ||||||| Sbjct 11328092 CTCCCCGTCAGGGAATCGAACTCTGGTCTCCCGCGTGACAAGCRGGGATACTAACCACTA 11328151 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 11328152 TACTAACGAGGA 11328163 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || |||||||||||||||||||||||||||||||| || | ||||| |||||| Sbjct 11329594 CTCCCCGTCAGGGAATCGAACCCTGGTCTCCCGCGTGACAAGCAGGGATACTTTCCACTA 11329653 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 11329654 TACTAACGAGGA 11329665 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || |||||||||||||||||||||||| |||||| |||| ||||| ||||| | Sbjct 11329387 CTCCCCGTCAGGGAATCGAACCCTGGTCTCCCATGTGACAAGCGGGGATACTTACCACGA 11329446 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 11329447 TACTAACGAGGA 11329458 Score = 82.4 bits (90), Expect = 9e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 60075 AGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGA 60134 ||||||| ||| || ||||||||||||||||||||| |||||||||||||||||| || Sbjct 26638802 AGGGAATTGAATCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAATGA 26638861 Query 60135 GGA 60137 ||| Sbjct 26638862 GGA 26638864 >seq17 Length=30788009 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 8068641 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 8068700 Query 60126 TACTACCGAGGA 60137 ||||| | |||| Sbjct 8068701 TACTAACAAGGA 8068712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571797815111040