Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq14 120 2e-22 seq12 84.2 1e-11 >seq14 Length=28338960 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||||||| ||| | || |||| ||||||||| || || Sbjct 16346962 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 16346903 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| ||||||||| ||| | || |||||| || ||||| ||| | || Sbjct 16346902 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTC 16346843 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| |||||||||||||||||||| || || || Sbjct 16346842 TCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACG 16346783 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 16346782 AAGATCTGCAT 16346772 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 |||||| || || |||||||| ||||| ||| | || |||| |||||| || || || Sbjct 16346507 TTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAA 16346448 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || |||| ||||||||| ||| | || |||||| || ||||| ||||| | | Sbjct 16346447 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTG-GCTTTGACGT 16346389 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | ||| | | || || |||| |||||||||||||||||||| || || | Sbjct 16346388 TCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGA 16346329 Query 34377 CAAAGATCTGCAT 34389 ||||||||||||| Sbjct 16346328 CAAAGATCTGCAT 16346316 Score = 102 bits (112), Expect = 5e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| || |||||||| || || ||| | || |||| ||| ||||| || || Sbjct 16342736 TTCTTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAA 16342677 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || |||| ||||||||| ||| | || |||||| || || ||| ||||| | | Sbjct 16342676 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAT-TTTGGCTTTGACGT 16342618 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | || || |||| |||||||||||||||||||| ||||| | Sbjct 16342617 TCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTTTTGA 16342558 Query 34377 CAAAGATCTGCAT 34389 | ||||||||||| Sbjct 16342557 CGAAGATCTGCAT 16342545 Score = 96.9 bits (106), Expect = 2e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 34243 CTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTAT 34302 |||||| || || || || |||| ||||||||| ||| | || |||||| || || Sbjct 16341312 CTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAT 16341253 Query 34303 CTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCC 34362 ||| ||| | || | || | ||| | | || || |||| |||||||||||||| Sbjct 16341252 CTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCC 16341193 Query 34363 GGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||||| ||||||||||||||||||||| Sbjct 16341192 GGTGAGGGTTTTCACAAAGATCTGCATC 16341165 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||||||||| ||| | || Sbjct 16346755 AGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 16346696 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || || || || | || ||||||||| ||| | || |||||| || Sbjct 16346695 TCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTATC- 16346637 Query 34298 GCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||||| ||| | | | || | || | | || || |||| ||||||| Sbjct 16346636 -CTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGG 16346578 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | ||||||||||| || || || ||||||||||| Sbjct 16346577 TCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 16346544 >seq12 Length=26439574 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| ||||| ||| | || |||| ||| ||||| || || Sbjct 2383515 TCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAG 2383456 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || | ||||||||| | | || || || || |||||| ||| | | Sbjct 2383455 ATCAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTC 2383396 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| |||||||| || || ||||| ||||||||| Sbjct 2383395 TCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACA 2383336 Query 34379 AAGATCTGCAT 34389 || |||||||| Sbjct 2383335 AAAATCTGCAT 2383325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323061101166080