Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq6 239 3e-58 seq9 102 6e-17 >seq6 Length=31529174 Score = 239 bits (264), Expect = 3e-58 Identities = 594/881 (67%), Gaps = 27/881 (3%) Strand=Plus/Minus Query 107694 AGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAA 107753 ||| | || |||||| | || |||||||| ||||| |||||| |||| ||||||| || Sbjct 24758930 AGTGAGGAGGAGCTAAATTTTCCCATTGCATACTCCATGGTGATCCACAAGAAGATAGAG 24758871 Query 107754 AACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTG 107813 | |||||||| || || ||| | | ||||| || |||||||| ||||| |||| | Sbjct 24758870 ATGTTTGAACGACTCCTACGATCTATTTATGCTCCACAGAACATCTACTGCATCCATATT 24758811 Query 107814 GATGTGAAGTCCCCAGAGACTTT-CAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCC 107872 || |||||| | | |||| || || ||| || |||| || |||||||||| || Sbjct 24758810 GACCAGAAGTCTTCCCTGTCTTTTCACAG-GGCTGTGAAGGAAATAGTTTCCTGCTTTCC 24758752 Query 107873 CAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCA 107932 |||||| || | |||||||| || | || || ||||| || ||||||||||| || Sbjct 24758751 CAATGTTTTTGTAGCCAGTAAATTAGAAAGTGTTGTGTATGCTTCATGGTCCAGAGTACA 24758692 Query 107933 AGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTC---AGTGCCATGGAAGTACTT 107989 ||||| |||||||| ||| |||| |||| || ||| ||| | ||||| ||| | Sbjct 24758691 GGCTGATCTGAACTGCATGAAAGATCTGCTGCA---CTCTGAAGTTCAGTGGAAATACCT 24758635 Query 107990 ACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCT 108049 |||||||| || ||||||||||| ||||| || ||||| |||||||| |||| || Sbjct 24758634 TCTGAATACCTGTGGGACAGACTTTCCCATCAAAACCAACAGGGAGATGGTGATGGCTCT 24758575 Query 108050 CAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaa 108109 || | | || || | |||||| ||||| |||| || | || ||||| ||| Sbjct 24758574 GAAAGTCCTCAATGGGAGGAACAGCATGGAAACTGAAGTCACCAGTGTCTCCAAGAAAGG 24758515 Query 108110 TCGCTGGAAATACCGCTATGAGGT-GACAGACACACTGT-ACCCTACCAG-CAAGATGAA 108166 ||||||| | |||| | | | || | || || || | | | ||| || || ||| Sbjct 24758514 TCGCTGGCAGTACCACCACAATGTCGCCA---ACGGCGTCATCAGAACAGACATGA-GAA 24758459 Query 108167 GGACCCTCCCCCTGATAATTTACCC-ATGTTCACAGGGA---ATGCCTATTTTGTGGCCT 108222 | || || | || | ||| |||||| |||| | ||||| ||||||| || Sbjct 24758458 AAAGCCCGCCGCCCATCAGCAGCCCAATGTTCTCAGGAAGCGCAGCCTACTTTGTGGTCT 24758399 Query 108223 CTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGG 108282 || | |||||||| || | | | | ||| | || | | | | || |||| Sbjct 24758398 CTAGGGCCTTTGTGAAATACTTGATGCAGAACGGAGAGGTTCAGAAATTCATGGAGTGGG 24758339 Query 108283 TCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG--TGCTCCGTG 108340 |||||||| || || || ||||||||| | ||||||||||| ||| | || ||| | Sbjct 24758338 AAAAAGACACATACAGTCCAGACGAACACATGTGGGCCACCCTGCAGAGGATG-TCC-TC 24758281 Query 108341 GATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGC 108400 | | ||||| || | || || ||| ||| ||| || ||||||| || | || Sbjct 24758280 GGTTCCTGGATCAATGCCCCCAAACAGCAAATATGACACGTCGGACATGATGGCTCTTGC 24758221 Query 108401 CAG-GCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCAC 108459 | | ||| ||||||||| || ||||| || | | || || || || | Sbjct 24758220 CCGAGCT-GTCAAGTGGTCTTATTTAACAGGAGACGTGAAAAAAGGAGCTCCGTACTATC 24758162 Query 108460 CCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGA 108519 | || || | | | |||| ||| | || | ||||| ||||| ||||| ||| Sbjct 24758161 CATGTATGGGGACCTACAGGAGAGCCGTGTGTGTGTACGGCGCCGGCGACCTCCTGTGGC 24758102 Query 108520 TTCTCCAGA-ACCATCACCTCTTGGCAAACAAGTTTGACCC 108559 | || ||| | || |||||||| ||||| ||||||||||| Sbjct 24758101 TCCT-GAGACAGCAGCACCTCTTTGCAAATAAGTTTGACCC 24758062 >seq9 Length=34117797 Score = 102 bits (112), Expect = 6e-17 Identities = 191/278 (69%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 107754 AACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTG 107813 ||||||||||| ||||| |||||| | ||||| ||||||||||| || ||| | || ||| Sbjct 21091997 AACTTTGAACGACTGCTACGAGCCATCTATGCACCTCAGAACATTTATTGTATTCATGTG 21091938 Query 107814 GATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCC 107873 || || |||| || | |||| || | | ||| | ||||| || ||| Sbjct 21091937 GACAAAAAATCCCAGCCCTCTGTAAAAGCTGCCATTACCAGCATCGTATCCTGTTTTCCC 21091878 Query 107874 AATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAA 107933 ||||||||||||| ||| || || |||||||| || ||| | | || ||| Sbjct 21091877 AATGTCTTCATGGTCAGACAGGCTGTGAGTGTGGTTTACGCTGGGTGGCCTCGTGTCCAA 21091818 Query 107934 GCTGACCTGAACTGTATGGAAGACTTGCTCCA-GAGCTCAGTGC--CATGGAAGTACTTA 107990 |||||||| ||||| |||| ||| ||| | || | |||||| ||||| ||||| Sbjct 21091817 GCTGACCTCAACTGCATGGCTGAC---CTCTATGAACGCAGTGCAGAGTGGAAATACTTC 21091761 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 | || || || ||||||||| |||| ||||| Sbjct 21091760 ATCAACCTCTGTGGACAAGACTTCCCTCTAAAAACCAA 21091723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348257051152032