Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq13 141 2e-28 >seq13 Length=33524197 Score = 141 bits (156), Expect = 2e-28 Identities = 633/1000 (63%), Gaps = 32/1000 (3%) Strand=Plus/Plus Query 248437 GACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGCGCGCATCAAGAAGCTCTGT 248496 || |||||| | || ||| | ||||| |||||| | | |||||| ||||||| || Sbjct 17854233 GATGGGCGCCAGGAGCGCGTCATGTTCGATAAAATCACCTCCCGCATCCAGAAGCTTTGC 17854292 Query 248497 TATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCGCCCAGAAAGTTATTTCGGGC 248556 || || ||| | || |||| || |||| ||| || ||| || || |||| Sbjct 17854293 TACGGCCTGAACCCGGACTTTGTGGATCCGACTCAGATCACCATGAAGGTGATCCAGGGC 17854352 Query 248557 GTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAGCTGCGGAGACGGCGGCGTAC 248616 | |||| ||| || || || || || ||||| |||| || |||| ||||| | Sbjct 17854353 TTGTACAGCGGCGTCACCACCGTGGAGCTAGACACGCTAGCGGCAGAGATTGCGGCCACC 17854412 Query 248617 ATGGCGATTGCACACCCCGACTACTCGCTGCTGGCCGGGAGGATCGCCGTCTCAAGGCTT 248676 || ||| ||||||||||||| | | ||||| | |||||| |||||||| | || Sbjct 17854413 CTGACGACCAAACACCCCGACTACGCCATCCTGGCTGCGAGGATTGCCGTCTCCAACCTG 17854472 Query 248677 CACAAAGAAACGAAAGAGTCGTTCGTCGAAACCATGGCTGACCTACATGCCTATGGGA-- 248734 ||||| || || || || |||| ||| |||| ||||| ||||| | | Sbjct 17854473 CACAAGGAGACCAAGAAGGTGTTCAGCGAGGTGATGGAAGACCTGTTCGCCTACGTCAAC 17854532 Query 248735 ----TGG-----------TCGCCGATGACGTCCA------CAC-CGTCAT--TCA-GGAC 248769 || || || |||| |||| ||| || ||| ||| ||| Sbjct 17854533 CCTCTGAACAAACGCCACTCTCCCATGATCTCCAAGGAGACACTCGACATCGTCATGGAA 17854592 Query 248770 AACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTT 248829 ||| | ||| ||| | | | || |||| || |||||| ||| | ||||| Sbjct 17854593 AACAAGGACCGCCTCAATTCCTCCATCATTTACGACAGAGATTTCTCCTACAACTTCTTC 17854652 Query 248830 GCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGA 248889 | ||||| || |||||| || || || || || || | || || | | || || Sbjct 17854653 GGCTTCAAGACTCTGGAGCGCTCCTACCTGCTGAAGATCAACGGGAAAGTGGCCGAGCGG 17854712 Query 248890 ATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTG 248949 ||||||||| | ||| | ||| | || ||||| ||| | ||||| || || Sbjct 17854713 CCGCAGCACATGCTCATGAGGGTGTCAGTTGGGATCCACGGGCGAGACATCGACGCCGCC 17854772 Query 248950 CTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTC 249009 ||||||| |||| | || || ||| | || || ||| | ||||| |||||| Sbjct 17854773 ATCGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACGCCTCTCCGACCCTCTTC 17854832 Query 249010 AACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGAC 249069 |||||||| ||| | |||||| | ||||| || || |||||| | |||||| Sbjct 17854833 AACGCCGGGACCAACCGGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGAC 17854892 Query 249070 TCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGC 249129 |||| ||||| |||||||| || || ||| || ||||| || | ||| ||| Sbjct 17854893 AGCATCGAAGGCATCTATGACACCCTGAAGCAGTGCGCTCTCATTTCCAAGTCCGCTGGC 17854952 Query 249130 GGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAAT 249189 || ||||| | | || | ||||||| ||| ||| |||||| || || || Sbjct 17854953 GGGATCGGCGTGGCGGTGAGCTGCATCCGATCGACGGGAAGCTACATCGCCGGCACCAAC 17855012 Query 249190 GGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATC 249249 || | | || | || || | || || | | ||| || | | | || Sbjct 17855013 GGCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACAACAACACGGCTCGCTACGTC 17855072 Query 249250 AACCAGGCCGGGCGCCGAAAG----GGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGC 249305 |||||| | ||| | | || ||| | ||||||||||| |||| ||||||| Sbjct 17855073 GACCAGGGC-GGCAACAAGAGACCCGGGGCCTTCGCCATGTACCTGGAGCCGTGGCACTT 17855131 Query 249306 CGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCG 249365 ||| | || || |||||||| |||| ||||||| || || ||| |||||| | Sbjct 17855132 CGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGAGCCAG 17855191 Query 249366 TGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 || || ||||||| | ||||| || | ||| |||||||| Sbjct 17855192 AGATCTTTTCTACGCCTTGTGGATCCCTGACCTGTTCATG 17855231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073728318874624