Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq13 450 1e-121 seq14 111 1e-19 seq21 87.8 2e-12 >seq13 Length=33524197 Score = 450 bits (498), Expect = 1e-121 Identities = 1029/1540 (67%), Gaps = 31/1540 (2%) Strand=Plus/Minus Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468 |||||||||| ||| | |||| || |||| || ||| |||| || | || ||| Sbjct 17856172 TCGTTCCACAGGCCGCGCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACAATCTGGAAC 17856113 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || ||||||| || | ||| ||| |||||| ||| ||| |||| || || ||| Sbjct 17856112 TCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTG 17856053 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 || ||||| ||||| ||||| || || || ||||| ||||||| ||| || ||| ||| Sbjct 17856052 TTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTC 17855993 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTC 22648 | ||| || || | || || ||| |||| | |||||||||||| |||| ||||||| Sbjct 17855992 ACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGGCGTC 17855933 Query 22649 ACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGC-TGCCTTCGTACGT 22707 || |||||||| ||||| || | | ||| || | ||||| ||| |||||||| Sbjct 17855932 ---TTCTCCCACATGTCGTACTGGAGAATGCCCTTGCT-GACGGGCGAGCCCTCGTACGT 17855877 Query 22708 TTCGTACGGACC-ATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATA 22766 ||||| || || | | | ||||| || |||||||| ||||||| ||| ||| || | Sbjct 17855876 CTCGTAGGGGCCGAGCTCT-GCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGA 17855818 Query 22767 TAGTCTCGAAGATTTTCTTGTTCAATTCGGC--GGCGGCGACGCTTTCGTACGGCATACG 22824 | ||||||||||| | |||| | | || ||| || ||||||| |||| || Sbjct 17855817 TGGTCTCGAAGATCTGGATGTTGA--GCAGCTGGGCTTCGGGGCTTTCGAACGGGTGCCG 17855760 Query 22825 CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAG 22884 ||||| | ||| ||||| |||| |||||| ||||| || |||||||| | || | Sbjct 17855759 CATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGACGCTT 17855700 Query 22885 ATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTT 22944 || ||| | || || || | || || | || ||||| | |||| | ||| Sbjct 17855699 GTTGGACGTCTCGGCTTCAGGGACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTT 17855640 Query 22945 TCTGGTCACAATT---TTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTG 23001 | |||| ||| || || | | |||||| || | | | | Sbjct 17855639 T---TTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGG 17855583 Query 23002 TACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGA 23061 || || |||||| |||||| ||||| || ||||| ||||||||||| || ||| Sbjct 17855582 CGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCATCCTTGCT 17855523 Query 23062 CGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTG 23121 |||||||| || | || || || |||||||| || || |||||||||| || |||| Sbjct 17855522 GGTGTACTCCACCACCTCCGTGCAGAGATTGCTGCATTTGATCGTGCCCAGGTTCTTCTG 17855463 Query 23122 GTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTG 23181 |||||| || | ||||| | ||||||||||||||||| ||||| || || ||| ||| Sbjct 17855462 GTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTG 17855403 Query 23182 CGACTCGATGATCGCTCGCCACATAGTCTGAG-CGTGAACACGT--CGCACGTACCTGCC 23238 ||||||||||| || ||| | ||| | | | | ||| | ||| ||| || Sbjct 17855402 GGACTCGATGATGGCGTACCAGAGCTGCTGCGCCTTTACCACCTTCTTCAC---CCTCCC 17855346 Query 23239 TTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC 23298 ||| | ||| || | ||| | | || || || | || | || ||| | || || Sbjct 17855345 TTCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCTAGCCC 17855286 Query 23299 GGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAA 23358 || | | | |||||||| | ||| || | || || | |||| || Sbjct 17855285 AGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAA 17855226 Query 23359 AAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGT 23418 || || || ||||| | |||||||| || || | ||| | | |||||| || || || Sbjct 17855225 CAGGTCAGGGATCCACAAGGCGTAGAAAAGATCTCTGGCTCTCTGCTCCTCCTTTCCTGT 17855166 Query 23419 GTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGC 23478 |||||| |||| |||| ||||| |||||||| ||||||||||| ||||| | ||| Sbjct 17855165 GTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGC 17855106 Query 23479 AAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACAC 23538 || || || |||||||| ||||||||||| |||||||| || |||||||||||||| || Sbjct 17855105 GAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAAC 17855046 Query 23539 TCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTT- 23597 ||| |||||||| || | |||||||| |||| ||| || | | | ||| Sbjct 17855045 TCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCGA----TGTAGCTTC 17854990 Query 23598 ---TTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCG 23654 | | ||| | | | || | || || || || | || || || || | | Sbjct 17854989 CCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGAG 17854930 Query 23655 CGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGA 23714 |||| || ||||| ||||| |||||||| ||||||||||| || || | |||| || || Sbjct 17854929 CGCACTGCTTCAGGGTGTCATAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGA 17854870 Query 23715 AACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCG 23774 | || |||| |||| | || |||| ||| || ||||| |||||| | Sbjct 17854869 AGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGG 17854810 Query 23775 TAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGT 23834 | || | | ||||| || ||||| || ||||||||||| || ||||| |||| Sbjct 17854809 TGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCGGCGTCGATGTCTCGCCCGT 17854750 Query 23835 GTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAA 23894 | || || | | || | ||| | ||||| || || | |||| || ||||| | Sbjct 17854749 GGATCCCAACTGACACCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGA 17854690 Query 23895 TTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAA 23934 | || | ||| || || || | || || || || || || Sbjct 17854689 TCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCGAA 17854650 >seq14 Length=28338960 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || || ||||||| || || || ||||| | || ||||||| || | || | Sbjct 9811782 TTTCCACTCGCTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTAGCTC 9811841 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||| ||||| || |||||||| |||| |||||||| || |||||||| ||||||| Sbjct 9811842 TCTGCTCTTCTTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCATGCC 9811901 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| || | || || || ||||||| Sbjct 9811902 ACGGCTCCAGGTACACAGAGAAGGCCCCTGGTCTCT 9811937 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || ||||| || || |||||||| |||||| | || || || | Sbjct 16346311 CAAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGC 16346370 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||| | || | |||||| | || ||| ||||| ||| | || || | Sbjct 16346371 CCAGCGACACCATTGAGAACGTCAAAGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTG 16346430 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||| | || || || || || || ||| ||||||| || || || | Sbjct 16346431 ACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACT 16346490 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | || || ||||||||||| || || || || || || | |||||||| || Sbjct 16346491 ACAATATCCAAAAAGAATCCACCCTCCACCTTGTTCTCCGTCTGAGGGGTGG 16346542 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || || |||||||| |||||| | || || || || Sbjct 16342545 ATGCAGATCTTCGTCAAAACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGT 16342604 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| ||| ||||| ||| | || || |||||| Sbjct 16342605 GACACCATTGAGAACGTCAAAGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 16342664 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||| | || || || |||||||||||| |||| || Sbjct 16342665 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAGGA 16342699 >seq21 Length=25773841 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || ||||||||||| || || || ||||| || || || || || || || ||| || Sbjct 1860795 GCCTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCCATCTTCTGGCTG 1860854 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| | |||||||||||||||||||| || ||||||||| | || || |||||| Sbjct 1860855 AAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCCGAGACGAG 1860914 Query 58101 G 58101 | Sbjct 1860915 G 1860915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445750976482560