Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq13 439 3e-118 seq14 102 1e-16 seq21 87.8 2e-12 >seq13 Length=33524197 Score = 439 bits (486), Expect = 3e-118 Identities = 1293/1981 (65%), Gaps = 35/1981 (2%) Strand=Plus/Minus Query 62294 CTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62353 |||||||||||| | | | || | | | ||||| ||||| || ||||| | | Sbjct 17856215 CTGAATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 17856156 Query 62354 CTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCT 62413 ||| || | | | ||||| || ||||| || | ||||| ||||| |||| || || Sbjct 17856155 CTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACAATCTGGAACTCTCCGGACAGCACCCT 17856096 Query 62414 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62473 || ||||| || || ||||| |||| || | ||||| || || |||| || || || Sbjct 17856095 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 17856036 Query 62474 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62533 || || || || ||||| || |||| || | || || || | || | | | ||| Sbjct 17856035 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGAT 17855976 Query 62534 TTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG-------TACAACANNNNNNN 62586 || || || || | | ||| | ||| || || | ||| | | ||| Sbjct 17855975 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGGCGTCTTCTCCCACATGTCG-- 17855918 Query 62587 NNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTT 62646 || || ||||| || || ||| || ||| || | || || || || || || Sbjct 17855917 -----TACTGGAGAATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGA 17855863 Query 62647 CCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCT 62706 || | || || | || || ||||| | || ||| || ||||| || ||||||| Sbjct 17855862 GCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCT 17855803 Query 62707 TCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGT 62766 | || || || ||||| ||||| || || || | | || || || |||| Sbjct 17855802 GGATGTTGAGCAGCTGGGCTTCGGGGCTTTCGAACGGGTGCCGCATCAGGATGAAGGCGT 17855743 Query 62767 CCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTT 62826 | || | || || || || || ||||| || || || | ||| || || | || |||| Sbjct 17855742 CGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGACGCTTGTTGGACGTCTCGGCTT 17855683 Query 62827 CTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGA 62886 | || | || || || || || || || || || ||||| ||| | || ||||| ||| Sbjct 17855682 CAGGGACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGG 17855623 Query 62887 CCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATG 62943 || ||| || || || || || ||| | || ||||||| | | Sbjct 17855622 TGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGG 17855563 Query 62944 CAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTC 63001 | | || ||||| || || ||||| ||||||| | | | | || | | | ||| Sbjct 17855562 CGATGGAGGCCAGGTTGCAGACGGCCACCTCATC--CTTGCTGGTGTACTCCACCACCTC 17855505 Query 63002 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63061 ||||| ||||| || || ||||| || || | || | || || ||||| |||| || Sbjct 17855504 CGTGCAGAGATTGCTGCATTTGATCGTGCCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCA 17855445 Query 63062 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63121 || ||||| || || ||| | || || || ||||| |||| || || || || || | Sbjct 17855444 AGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTA 17855385 Query 63122 CCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTAT 63180 ||||| | || | ||||||| | || |||| ||| | || ||| || | Sbjct 17855384 CCAGAGCTGCT-GCGCCTTTACCACCTTCTTCACCCTCCCTTCCTTCTCATATCTGGTGT 17855326 Query 63181 ACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACA 63240 | | |||||||| |||||||| | ||| | | |||||| || ||||||| Sbjct 17855325 AGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCTAGCCCAGGACACTCGCTGGGACACA 17855266 Query 63241 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63300 |||| ||||| || || || ||||| ||||| || || ||||| ||||| | | Sbjct 17855265 TCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGG 17855206 Query 63301 C-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63359 | || ||| |||||||| | ||| || ||||| |||||||| ||||| || || || ||| Sbjct 17855205 CGTAGAAA-AGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGG 17855147 Query 63360 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63419 || | | | || | |||||||| |||| ||| ||||| | | || || | ||| Sbjct 17855146 AAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTG 17855087 Query 63420 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63479 || || ||||| || | ||| | ||| ||||| || |||||||||| ||| || | | Sbjct 17855086 TTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAAT 17855027 Query 63480 CCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATT 63539 ||||| || | || ||||| |||| ||| |||| ||| | | || || || | Sbjct 17855026 CCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACC 17854967 Query 63540 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAG 63599 | | || || || || || || || || | ||||| | || | ||||||||| Sbjct 17854966 GCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGAGCGCACTGCTTCAGGGTGTCATAG 17854907 Query 63600 ATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63659 |||||||| ||||| || || ||||| || || || ||||| |||| || | || Sbjct 17854906 ATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGG 17854847 Query 63660 GTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 63719 | || || || || || | ||| ||||| ||||| || ||||| || || || || || Sbjct 17854846 TTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGG 17854787 Query 63720 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63779 ||||| ||||| || || | ||| || || | || || || |||| || | ||| Sbjct 17854786 TTGTAGGTCTCGATGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACTGACACCCTCATG 17854727 Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 | ||||||||| || | || | | ||| ||| || |||| || |||||| ||| Sbjct 17854726 AGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCC 17854667 Query 63840 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTG 63899 | ||| || || || || ||||||| || || |||| |||||||| || |||||| Sbjct 17854666 AGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGAGGAATTG 17854607 Query 63900 AGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTT-GAAATAATCGGAGAAT- 63957 || ||||| | || | || || || | || | ||| || || || ||||| | Sbjct 17854606 AGGCGGTCCTTGTTTTCCATGACGATGTCGAGTGT-CTCCTTGGAGATCATGGGAGAGTG 17854548 Query 63958 --GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 64015 |||| || ||| || || ||| ||| | || |||||||| || || || | Sbjct 17854547 GCGTTT---GTTCAGAGGGTTGACGTAGGCGAACAGGTCTTCCATCACCTCGCTGAACAC 17854491 Query 64016 tttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATC 64075 || || || |||||||| || || || | ||| || || || || || ||||| || || Sbjct 17854490 CTTCTTGGTCTCCTTGTGCAGGTTGGAGACGGCAATCCTCGCAGCCAGGATGGCGTAGTC 17854431 Query 64076 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64135 || |||| || || ||||| || || || || || || ||||| | || || || Sbjct 17854430 GGGGTGTTTGGTCGTCAGGGTGGCCGCAATCTCTGCCGCTAGCGTGTCTAGCTCCACGGT 17854371 Query 64136 TGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATG 64195 || || || | || | || || || |||||||| | || | | | ||||| | | Sbjct 17854370 GGTGACGCCGCTGTACAAGCCCTGGATCACCTTCATGGTGATCTGAGTCGGATCCACAAA 17854311 Query 64196 ATCCGTGTTTAAGCCATAGCACAATTTTCT-AATACGAGACGTGATTTTATCAAACATGA 64254 |||| ||| | ||| ||||| || |||| || || || ||||||||||| ||||||| Sbjct 17854310 GTCCGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGA 17854252 Query 64255 C 64255 | Sbjct 17854251 C 17854251 Score = 93.3 bits (102), Expect = 5e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || ||||| || || ||||| ||| | || || || || ||||| | Sbjct 17856478 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTTCCATAGTTGGGCTCAGCGATGTGGATGT 17856419 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| || || || || |||||||||||||| | |||||| ||||| | | | |||| Sbjct 17856418 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCTGCCATCCTCAGCACGGTCT 17856359 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62281 | || | |||||||||| |||||||| | |||| | || ||||| Sbjct 17856358 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCCTCTGG 17856310 >seq14 Length=28338960 Score = 102 bits (112), Expect = 1e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 ||||||||||||| ||||| || || |||||| || | || || || || || || | Sbjct 9808402 TCCATCCGTAAAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCGATGTGAATGT 9808461 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| ||| ||||| ||||||||| ||| || | ||||| ||||| || | || || | Sbjct 9808462 TCAGAGACTGACTCTGATCGATGTAGGTGCCACGATCTGCTGCCATCTTGAGGACGGTTT 9808521 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62281 | || | |||||||||| |||||||| | |||| | ||| ||||| Sbjct 9808522 TCTGGGAGATTTCCCAAACTGTTTTATAGAGCTGCTTCAGATCATCTGG 9808570 >seq21 Length=25773841 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 ||||||||| || || | ||||| || || || |||||||| ||||| | ||| | Sbjct 1860915 CCTCGTCTCGGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1860856 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| ||||| || || || ||||||||||| || || || || |||| Sbjct 1860855 TCAGCCAGAAGATGGCGGCGAACGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 1860796 Query 33724 CAATAAGTCTCTCTCC 33739 | | | ||||||||| Sbjct 1860795 CCACCACTCTCTCTCC 1860780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629795808311040