Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq12 96.9 3e-15 seq14 93.3 4e-14 seq13 86.0 6e-12 >seq12 Length=26439574 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || || |||| ||||| |||||||| ||| Sbjct 2383293 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 2383234 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || ||| | ||||||||||| || ||| | |||| ||| Sbjct 2383233 GCAAAGATGAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCC-TGAATCTTTGCTTT 2383175 Query 139688 AGCTGTTC-CACTG-TGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 | |||| || || | || ||||||||||||| | ||| | ||||| || || | | Sbjct 2383174 CAC-GTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGG 2383116 Query 139746 TTTTTACGAATATTTGCAT 139764 |||| ||||| || ||||| Sbjct 2383115 TTTTCACGAAAATCTGCAT 2383097 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || || |||| ||||| |||||||| ||| Sbjct 2383521 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 2383462 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || ||| | ||||||||||| || ||| | |||| || Sbjct 2383461 GCAAAGATCAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATC-CTGAATCTTTGCCTT 2383403 Query 139688 AGCTGTTC-CACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 | |||| || | || || ||||||||||||| | ||| | ||||| || || | | Sbjct 2383402 CAC-GTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGG 2383344 Query 139746 TTTTTACGAATATTTGCAT 139764 |||| || || || ||||| Sbjct 2383343 TTTTCACAAAAATCTGCAT 2383325 >seq14 Length=28338960 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || |||||||| |||||| ||||||| | ||||| || || || ||||| || || Sbjct 16342699 TCCTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTA 16342640 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| ||| | | || | ||||| ||||||||||||| | ||| | Sbjct 16342639 TCCTGGATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 16342580 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || |||||||| | ||||| ||||| || |||||| Sbjct 16342579 GTTTTGCCGGTGAGGGTTTTGACGAAGATCTGCATA 16342544 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || | | ||| | ||| | ||| | || ||||| || || ||||| || ||| Sbjct 16347001 TGGCCACCCCTAAGACGGAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 16346942 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || |||| ||||| ||||| || || ||| ||||||| | ||||| || || Sbjct 16346941 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGG 16346882 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || || || ||| || || | | || | |||||| |||||||| Sbjct 16346881 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCC 16346822 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | ||| | || |||||||| | || || ||||| || |||||| Sbjct 16346821 ACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 16346771 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| || || ||||| || ||| || |||| ||||| ||||| Sbjct 16346747 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTG 16346688 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || ||| |||||| | ||||| || || || ||||| || || || |||||| Sbjct 16346687 CTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTT 16346628 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | ||||| ||||||||||||| | ||| | ||||||||||| Sbjct 16346627 GGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGT 16346568 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | || || ||||| || ||||| Sbjct 16346567 GAGGGTCTTGACGAAGATCTGCAT 16346544 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| | ||| | ||| | || || |||||||| || || || || || |||| Sbjct 16346531 ACGGAGAACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCC 16346472 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || || ||| ||||||| | ||||| || || || ||||| || || Sbjct 16346471 ATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTT 16346412 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| || ||| | | || | |||||| ||||||||||||| | ||| | Sbjct 16346411 ATCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGAT 16346352 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || |||||||| | || || || || || ||||| Sbjct 16346351 GGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 16346316 >seq13 Length=33524197 Score = 86.0 bits (94), Expect = 6e-12 Identities = 120/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 153625 TGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTA 153684 |||||| ||| || || |||| |||||| ||||| || || | | || | | Sbjct 17855571 TGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCATCCTTGCTGGTGTACTCCA 17855512 Query 153685 CTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTT-TGATTGCTTTTG 153743 | | |||| || | |||||||||||| ||| ||| || | ||| || ||||| || Sbjct 17855511 CCACCTCCGTGCAGAGATTGCTGCATTTGATCGTGCC-CAGGTTCTTCTGGTTGCTCTTC 17855453 Query 153744 CGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGG 153789 | ||| |||||||||||||| |||||||| || || |||||||||| Sbjct 17855452 CTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGG 17855407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496046836185600