Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq13 434 1e-116 seq14 116 5e-21 seq21 84.2 3e-11 >seq13 Length=33524197 Score = 434 bits (480), Expect = 1e-116 Identities = 1294/1979 (65%), Gaps = 31/1979 (2%) Strand=Plus/Minus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 |||||||||||| | ||| || | | | || || ||||| || ||||| | | Sbjct 17856215 CTGAATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 17856156 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 ||| || | | | ||||| ||||| || || | || || ||||| |||| || || Sbjct 17856155 CTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACAATCTGGAACTCTCCGGACAGCACCCT 17856096 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || ||||| || || ||||| |||| || | ||||| || || |||| || || || Sbjct 17856095 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 17856036 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288 || || || || ||||| || |||| || || || || || | |||||| ||| Sbjct 17856035 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGAT 17855976 Query 71289 TTTATCTTTTAG-AGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNN 71347 || || || || || |||| | | ||| || || | || Sbjct 17855975 CTTCTCCTTCAGCAGCTTCC-AGTCCCACAGGTCGGTCGGCGTCTTCTCCCACATGTCGT 17855917 Query 71348 NNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTT 71407 ||||| || || || || || | || || ||||| || || | | Sbjct 17855916 ACTGGAGAATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTG 17855857 Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 |||| || || || || ||||| | || | | || ||||| ||||| |||| | | Sbjct 17855856 CGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGT 17855797 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 |||| || ||||| ||||| || || || | | || || || ||||| || | Sbjct 17855796 TGAGCAGCTGGGCTTCGGGGCTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCA 17855737 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 || || ||||| || ||||| || ||||| | ||| || || | || ||||| || | Sbjct 17855736 GACCCTGGACGCCGATCCCGATCGGCCTGTGACGCTTGTTGGACGTCTCGGCTTCAGGGA 17855677 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACAT 71647 || || || || || || || || || ||||| ||| | || ||||| ||| || Sbjct 17855676 CCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGG 17855617 Query 71648 CCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAG 71704 || || || || || ||| ||| | || ||| ||| | ||| | | Sbjct 17855616 AGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGATGG 17855557 Query 71705 ATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTGCA 71762 | ||||| || || ||||| ||||||| | || || || | | | || ||||| Sbjct 17855556 AGGCCAGGTTGCAGACGGCCACCTCATCCTTGCT--GGTGTACTCCACCACCTCCGTGCA 17855499 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 ||||| || || ||||| || || | || | || || ||||| |||| || || || Sbjct 17855498 GAGATTGCTGCATTTGATCGTGCCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAAGCGTC 17855439 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 71881 ||| || || || | || || || ||||| |||| || || || || || | ||||| Sbjct 17855438 CTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAG 17855379 Query 71882 CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATT--GTGTATATAA 71939 | || | ||||||| | ||||| ||| ||| | || ||| ||||| | Sbjct 17855378 CTGCT-GCGCCTTTACCACCTTCTTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCT 17855320 Query 71940 TCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCA 71998 || |||||||| |||||||| ||| | ||||| |||||||| || | |||||||||| Sbjct 17855319 TC--TCGAACTCCTCTCCCCA-GCACTCGTCTAGCCCAGGACACTCGCTGGGACACATCA 17855263 Query 71999 ATGACCACTC-TCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC- 72056 | ||||| || | | || | |||| ||||| || || ||||| ||||| | || Sbjct 17855262 AGGACCAGTCCTGGTTGCTC-TCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCG 17855204 Query 72057 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 72116 || ||| |||||||||| ||| |||||||| |||||||| ||||| || || || ||||| Sbjct 17855203 TAGAAA-AGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAA 17855145 Query 72117 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176 | | | || | |||||||| |||| ||| ||||| | | || || | ||||| Sbjct 17855144 GTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTT 17855085 Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 || ||||| || | ||| | ||| ||||| || |||||||||| ||| || | | || Sbjct 17855084 GCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCC 17855025 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||||| || ||||| |||| ||| |||||||| | | || || ||| | | Sbjct 17855024 GTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGC 17854965 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | || || || || || || || || | ||||| | || | || |||||||| Sbjct 17854964 CACGCCGATCCCGCCAGCGGACTTGGAAATGAGAGCGCACTGCTTCAGGGTGTCATAGAT 17854905 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 72416 ||| || || || || ||| ||||| || || || ||||| |||| || | || | Sbjct 17854904 GCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTT 17854845 Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 || || || || || | ||| ||||| ||||| || ||||| || || ||||| || || Sbjct 17854844 GGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTT 17854785 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 ||| ||||| || || | || || || | || || || || | || | ||| | Sbjct 17854784 GTAGGTCTCGATGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACTGACACCCTCATGAG 17854725 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| ||||| || | || | | || || || |||| || |||||| |||| Sbjct 17854724 CATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAG 17854665 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 ||| || || || || ||||||| || || |||| |||||||| || |||||||| Sbjct 17854664 AGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGAGGAATTGAG 17854605 Query 72657 TTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAA-ATAATCGGAGAATGTT 72715 ||||| | || | || || || | || | |||| | || || ||||| || Sbjct 17854604 GCGGTCCTTGTTTTCCATGACGATGTCGAGTGTC-TCCTTGGAGATCATGGGAGAGTGG- 17854547 Query 72716 TCCCATTTTT---AGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 72772 | || || ||| || || ||| ||| | || |||||||| || || || | | Sbjct 17854546 --CGTTTGTTCAGAGGGTTGACGTAGGCGAACAGGTCTTCCATCACCTCGCTGAACACCT 17854489 Query 72773 tttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTG 72832 | || || |||||||| || || || ||||| || || || || || ||||| || || | Sbjct 17854488 TCTTGGTCTCCTTGTGCAGGTTGGAGACGGCAATCCTCGCAGCCAGGATGGCGTAGTCGG 17854429 Query 72833 GATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTG 72892 | |||| || || ||||| || || ||||| || || ||||| | || || || | Sbjct 17854428 GGTGTTTGGTCGTCAGGGTGGCCGCAATCTCTGCCGCTAGCGTGTCTAGCTCCACGGTGG 17854369 Query 72893 TTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGAT 72952 | || || | || | || ||||| |||||||| | || | | | ||||| | | | Sbjct 17854368 TGACGCCGCTGTACAAGCCCTGGATCACCTTCATGGTGATCTGAGTCGGATCCACAAAGT 17854309 Query 72953 CAGTGTTTAAGCCATAACATAATTTTCTA-ATACGAGACGTGATTTTATCAAACATAAC 73010 | | ||| | ||| || || || |||| || || || ||||||||||| ||||| || Sbjct 17854308 CCGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGAC 17854251 Score = 107 bits (118), Expect = 3e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || ||||| || || ||||| |||| | || || || ||||| || | Sbjct 17856478 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTTCCATAGTTGGGCTCAGCGATGTGGATGT 17856419 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| |||||| || || |||||||||||||| | |||||| ||||| | | | |||| Sbjct 17856418 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCTGCCATCCTCAGCACGGTCT 17856359 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036 | || | |||||||||| |||||||| | |||| | || ||||| Sbjct 17856358 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCCTCTGG 17856310 >seq14 Length=28338960 Score = 116 bits (128), Expect = 5e-21 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 ||||||||||||| ||||| || || |||||| ||| | || || || |||||||| | Sbjct 9808402 TCCATCCGTAAAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCGATGTGAATGT 9808461 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| |||||||| ||||||||| ||| || | ||||| ||||| || | || || | Sbjct 9808462 TCAGAGACTGACTCTGATCGATGTAGGTGCCACGATCTGCTGCCATCTTGAGGACGGTTT 9808521 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036 | || | |||||||||| |||||||| | |||| | ||| ||||| Sbjct 9808522 TCTGGGAGATTTCCCAAACTGTTTTATAGAGCTGCTTCAGATCATCTGG 9808570 >seq21 Length=25773841 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| |||| || || | |||||| || || || |||||||| ||||| | ||| | Sbjct 1860915 CCTCGTCTCGGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1860856 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || || ||||| ||||||||||| || || || || |||| Sbjct 1860855 TCAGCCAGAAGATGGCGGCGAACGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 1860796 Query 42207 CAATAAGTCTCTCTCC 42222 | | | ||||||||| Sbjct 1860795 CCACCACTCTCTCTCC 1860780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671115978583680