Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq12 163 7e-35 seq14 143 6e-29 seq11 104 5e-17 >seq12 Length=26439574 Score = 163 bits (180), Expect = 7e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || ||||| Sbjct 2383326 ATGCCTCCCCTGAGACGGAGCACCAGGTGGACGGTGGACTCCTTCTGGATGTTGTAGTCC 2383267 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || ||||| |||||||| || || ||||| || |||||| Sbjct 2383266 GACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATGAGTCTCTGCTGGTCAGGA 2383207 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 | || |||||||||||||||||||||||||| || || || | |||||| || || || Sbjct 2383206 AGAATGCCTTCTTTATCCTGAATCTTTGCTTTCACGTTCTCAATGGTATCACTGGGCTCC 2383147 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| ||||| || ||||| || || |||||||| || Sbjct 2383146 ACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 2383094 Score = 161 bits (178), Expect = 2e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | || ||||| || ||||| ||| Sbjct 2383521 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 2383462 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || ||||| || |||||| | || ||||||||||||||||||||||| || Sbjct 2383461 GCAAAGATCAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCCTGAATCTTTGCCTTC 2383402 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| || || || ||||| || || || ||||| ||||| || ||| Sbjct 2383401 ACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTT 2383342 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 2383341 TTCACAAAAATCTGCAT 2383325 >seq14 Length=28338960 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| ||||| |||||||| || || | || || || || ||||| ||| Sbjct 16342741 GTGGATTCTTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCATCCTCCAGCTGTTTGCCA 16342682 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || ||||| || || || || |||||||| || || ||||| Sbjct 16342681 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTG 16342622 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || || ||||| || || || || || || || || ||| Sbjct 16342621 ACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTT 16342562 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 16342561 TTGACGAAGATCTGCAT 16342545 >seq11 Length=28875558 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || ||||| || || || || || || ||||| ||||| || ||||| ||||||| ||| Sbjct 15203320 GTGGCTTTCGCAGCAGTGGAGGGGATTTTCTTCTCGGGCTCATTTGCTGCTATCTACTGG 15203379 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| |||||||| |||||||| | || | ||| |||||| | || ||||||||| Sbjct 15203380 CTGAAGAAGAGAGGCCTCATGCCAGGCCTTACCTACTCCAACGAACTCATTAGCAGGGAC 15203439 Query 269258 GA 269259 || Sbjct 15203440 GA 15203441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151357565655744