Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq8 156 6e-33 seq9 125 1e-23 seq12 113 6e-20 >seq8 Length=27946405 Score = 156 bits (172), Expect = 6e-33 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 |||||||| |||| || || || || ||||||||||| |||||||| | || ||| Sbjct 3284817 TTGACGATGTCAAAGCCGACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCTGGCGAG 3284876 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 || ||| ||| |||| |||||||||||||| || |||||||||| ||| | || || Sbjct 3284877 CAAATGGGATTCCCCATCAGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACCATCGTC 3284936 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || || || |||||||| | |||||||| ||||| | | |||| ||| | ||||||| Sbjct 3284937 TCCCCAAAAATGGCGTTCAGCCGGGGCTTCTCCACGAGCAGGCCGGGGTAGAGCTCCACA 3284996 Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 || |||||||| || || || | ||| ||| || ||||| || |||||||| Sbjct 3284997 GCGTCGATGTCACCATACAGCTCTTCCAGTATGGCGGCCATTTCTTTGTCTCCTGT 3285052 Score = 114 bits (126), Expect = 2e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || |||| |||||| |||| |||||||| ||| ||| ||| ||| ||||| || Sbjct 3286356 TCACCAATAAGGATGAGCCGAGAAGTCTGAAAGAGTCTTTCATCATCCCAGTCTGGGTGA 3286415 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || |||| || || ||||| | |||||| || | ||||||||| || ||||||||| Sbjct 3286416 ACTTCCTTCAAAATGTCACACACCCGGTTGTGCTCACGGAGCCAGATGGTGGCGTACATC 3286475 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGC 9770 ||||| || || ||||| || || ||||| || || ||||| Sbjct 3286476 ATGAGGCCTGGGACCAGACCGAACGCCTCGTGGCCAACAGC 3286516 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 10284 AAGTCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTT 10343 || |||||| ||| || | ||| ||||| || || ||||| ||||| || | | Sbjct 3287314 AACTCACCTACGACTCCCATAGGGGTTGGGCAGTCCGCCGGAACTGGAGGAAGGGTACGA 3287373 Query 10344 GCGTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAG 10403 | || ||||| || ||||| | |||||||||||| |||| | |||||||| ||||| Sbjct 3287374 GTATAGTAGGACAGGTTGGAATAGGCTTCCCAGCTTTTGTATCCATAGTCCGCATTGTAA 3287433 Query 10404 ATGGGAGGGCTGTCAATCAAATCGGATC 10431 | ||||| |||||||||| || ||||| Sbjct 3287434 GTAGGAGGACTGTCAATCATATGGGATC 3287461 >seq9 Length=34117797 Score = 125 bits (138), Expect = 1e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 8762 TCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGG 8821 || || |||||||||||||| |||||||| |||| ||| |||| ||| | | ||| Sbjct 12530328 TCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCCGGAGAGTTGATGGGATTCCCAAGCAGG 12530387 Query 8822 CCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8881 ||||| ||||| || || || |||| ||| | |||||||| ||||| |||| |||||| Sbjct 12530388 CCTTTCAGGGAGAAAGGGGCTCCCATCTCCACCATGCTCTCTCCGAATATGGAGTTGGGG 12530447 Query 8882 CGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 || | ||||||| || || |||| || ||||||| || || ||||| ||||| || Sbjct 12530448 CGAGCTTTTTCCATCATGAGGCCGGGATAAAACTCCAGGGCATCAATGTCGCCGTAGAG 12530506 Score = 95.1 bits (104), Expect = 2e-14 Identities = 168/243 (69%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 || ||||||||||||| |||||||| || || || || ||| ||| |||||||| Sbjct 12537627 CCAATAATGATGAGTCTGGTGGTCTGGAAAAGCTGCTCATCATCCCAGGTCGGATGTTCG 12537686 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 | ||||| | || ||||| | |||||| ||||| |||||||| || |||||||| || Sbjct 12537687 CCCTTCAGGATGTCACACACCCGGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATGGTG 12537746 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGG--CA 9790 || || || | || || || | || || |||| || || || | |||| | Sbjct 12537747 AGGCCTGGGATGAGTCCGAACACTTCCTGTCCGATGGCGAGCTGCTGCTCAGCGGGGAAA 12537806 Query 9791 CTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCAC 9850 ||| ||| || | ||||| ||| |||| || |||| ||| || ||||| || | Sbjct 12537807 CTT--TCAGGGTACACCATGTCCACTGGGACCTCAGACACCGGGGGAGGGTACATCTCCC 12537864 Query 9851 CGT 9853 ||| Sbjct 12537865 CGT 12537867 >seq12 Length=26439574 Score = 113 bits (124), Expect = 6e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 || ||||| | || || || | || ||||| |||||||| |||||||| | |||||| Sbjct 9127882 TTCACGATGTCGAAGCCGACTTTGCCTCCGAATGTGCTGGGCTTCCAGTATGCTGGGGAG 9127941 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 || ||| ||| ||| |||||||||||||||||| || || |||| || | ||||| Sbjct 9127942 CATATGGGGTTACCCAGGAGGCCTTTGAGGGAAAAGGGGGCGCCCATTTCCACCATGCTT 9128001 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || ||||| || || | || | ||| |||| || || |||| ||| || || | | Sbjct 9128002 TCTCCGAATATCGCCCCCGTTCGAGTCTTCTCCAGCAGTAACCCGGGGTAAAATTCAAGA 9128061 Query 8921 GCCTCGATGTCTCCGTAAAG 8940 || ||||| || ||||| || Sbjct 9128062 GCGTCGATATCCCCGTAGAG 9128081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708500285041920