Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq13 443 3e-119 seq21 102 1e-16 seq14 102 1e-16 seq11 87.8 2e-12 >seq13 Length=33524197 Score = 443 bits (490), Expect = 3e-119 Identities = 1293/1978 (65%), Gaps = 29/1978 (1%) Strand=Plus/Minus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 |||||||||||| | ||| || | | | ||||| ||||| || ||||| | | Sbjct 17856215 CTGAATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 17856156 Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 ||| || | | | ||||| || || || || | || || ||||| |||| || || Sbjct 17856155 CTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACAATCTGGAACTCTCCGGACAGCACCCT 17856096 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 || ||||| || || ||||| |||| || | ||||| || || |||| || || || Sbjct 17856095 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 17856036 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482 || || || || ||||| || |||| || | || || || | || | | | ||| Sbjct 17856035 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGAT 17855976 Query 62483 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62542 || || || || | | ||| | ||| || || | ||| | | Sbjct 17855975 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGG--CGTCTTCTCCCACATGTCG 17855918 Query 62543 T--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 62600 | || ||||| || || ||| || ||| || | || || ||||| || || || Sbjct 17855917 TACTGGAGAATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCT 17855858 Query 62601 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 62660 | || || || || || ||||| | || ||| || ||||| |||||||||| | Sbjct 17855857 GCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATG 17855798 Query 62661 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCT 62720 || || || ||||| |||| || || || | | || || || ||||| || Sbjct 17855797 TTGAGCAGCTGGGCTTCGGGGCTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCC 17855738 Query 62721 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62780 | || || || || || ||||| || || || | ||| || || | || ||||| || Sbjct 17855737 AGACCCTGGACGCCGATCCCGATCGGCCTGTGACGCTTGTTGGACGTCTCGGCTTCAGGG 17855678 Query 62781 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62840 | || || || || || || || || || ||||| ||| | || ||||| ||| || Sbjct 17855677 ACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACG 17855618 Query 62841 TCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAAGGCAACA 62897 ||| || || || || || ||| | || ||||||| | ||| | Sbjct 17855617 GAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGATG 17855558 Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGC 62955 || ||||| || || ||||| ||||||| | | | | || | | | ||| |||| Sbjct 17855557 GAGGCCAGGTTGCAGACGGCCACCTCATC--CTTGCTGGTGTACTCCACCACCTCCGTGC 17855500 Query 62956 AAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 63015 | ||||| || || ||||| || || | || | || || ||||| |||| || || | Sbjct 17855499 AGAGATTGCTGCATTTGATCGTGCCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAAGCGT 17855440 Query 63016 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 63075 |||| || || ||| | || || || ||||| |||| || || || || || | ||||| Sbjct 17855439 CCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGA 17855380 Query 63076 -CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATA--GTGTATACA 63132 | || | ||||||| | || |||| ||| | || ||| ||||| | Sbjct 17855379 GCTGCT-GCGCCTTTACCACCTTCTTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGC 17855321 Query 63133 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 63192 || |||||||| |||||||| | ||| | |||||||| || |||||||||| Sbjct 17855320 TTC--TCGAACTCCTCTCCCCAGCACTCGTCTAGCCCAGGACACTCGCTGGGACACATCA 17855263 Query 63193 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-T 63251 | ||||| || || || ||||| ||||| || || ||||| ||||| | || | Sbjct 17855262 AGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGT 17855203 Query 63252 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63311 | ||| |||||||||| ||| || ||||| |||||||| ||||| || || || ||||| Sbjct 17855202 AGAAA-AGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAG 17855144 Query 63312 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63371 | | | || | |||||||| |||| ||| ||||| | | || || | ||||| Sbjct 17855143 TCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTG 17855084 Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431 || ||||| || | ||| | ||| ||||| || |||||||||| ||| || | | ||| Sbjct 17855083 CCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCG 17855024 Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63491 || || | || ||||| |||| ||| |||||||| | | || || || | | Sbjct 17855023 TTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCC 17854964 Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 | || || || || || || || || | ||||| | || | ||||||||||| Sbjct 17854963 ACGCCGATCCCGCCAGCGGACTTGGAAATGAGAGCGCACTGCTTCAGGGTGTCATAGATG 17854904 Query 63552 CCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63611 || || ||||| || || ||||| || || || ||||| |||| || | || | Sbjct 17854903 CCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTG 17854844 Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || || || || | ||| ||||| ||||| || ||||| || || || || || ||| Sbjct 17854843 GTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTG 17854784 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || ||||| || || | ||| || || | || || || |||| || | ||| | | Sbjct 17854783 TAGGTCTCGATGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACTGACACCCTCATGAGC 17854724 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 |||||||| || | || | | || ||| || |||| || |||||| |||| | Sbjct 17854723 ATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGA 17854664 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 63851 || || || || || ||||||| || || |||| |||||||| || || ||||| Sbjct 17854663 GTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGAGGAATTGAGG 17854604 Query 63852 TTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAAT---G 63907 ||||| | || | || || || | || | ||| || || || ||||| | | Sbjct 17854603 CGGTCCTTGTTTTCCATGACGATGTCGAGTGT-CTCCTTGGAGATCATGGGAGAGTGGCG 17854545 Query 63908 TTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 63967 ||| || ||| || || ||| ||| | || |||||||| || || || | || Sbjct 17854544 TTT---GTTCAGAGGGTTGACGTAGGCGAACAGGTCTTCCATCACCTCGCTGAACACCTT 17854488 Query 63968 ttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGG 64027 || || |||||||| || || || ||||| || || || || || ||||| || || || Sbjct 17854487 CTTGGTCTCCTTGTGCAGGTTGGAGACGGCAATCCTCGCAGCCAGGATGGCGTAGTCGGG 17854428 Query 64028 ATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGT 64087 |||| || || ||||| || || || || || || ||||| | || || || || Sbjct 17854427 GTGTTTGGTCGTCAGGGTGGCCGCAATCTCTGCCGCTAGCGTGTCTAGCTCCACGGTGGT 17854368 Query 64088 TACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATC 64147 || || | || | || || || |||||||| | || | | | ||||| | | || Sbjct 17854367 GACGCCGCTGTACAAGCCCTGGATCACCTTCATGGTGATCTGAGTCGGATCCACAAAGTC 17854308 Query 64148 CGTGTTTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATGAC 64204 || ||| | ||| || || || |||| || || || ||||||||||| |||||||| Sbjct 17854307 CGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGAC 17854251 Score = 93.3 bits (102), Expect = 5e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || ||||| || || ||||| ||| | || || || || ||||| | Sbjct 17856478 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTTCCATAGTTGGGCTCAGCGATGTGGATGT 17856419 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| || || || || |||||||||||||| | |||||| ||||| | | | |||| Sbjct 17856418 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCTGCCATCCTCAGCACGGTCT 17856359 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62230 | || | |||||||||| |||||||| | |||| | || ||||| Sbjct 17856358 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCCTCTGG 17856310 >seq21 Length=25773841 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 ||||||||| || || || |||||| || || || |||||||| ||||| | ||| | Sbjct 1860915 CCTCGTCTCGGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1860856 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || |||| ||||| || ||||| ||||||||||| || || || || |||| Sbjct 1860855 TCAGCCAGAAGATGGCGGCGAACGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 1860796 Query 33446 CAATAAGTCTCTCTCC 33461 | | | ||||||||| Sbjct 1860795 CCACCACTCTCTCTCC 1860780 >seq14 Length=28338960 Score = 102 bits (112), Expect = 1e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 ||||||||||||| ||||| || || |||||| || | || || || || || || | Sbjct 9808402 TCCATCCGTAAAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCGATGTGAATGT 9808461 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| ||| ||||| ||||||||| ||| || | ||||| ||||| || | || || | Sbjct 9808462 TCAGAGACTGACTCTGATCGATGTAGGTGCCACGATCTGCTGCCATCTTGAGGACGGTTT 9808521 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62230 | || | |||||||||| |||||||| | |||| | ||| ||||| Sbjct 9808522 TCTGGGAGATTTCCCAAACTGTTTTATAGAGCTGCTTCAGATCATCTGG 9808570 >seq11 Length=28875558 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 ||||||| || ||||| ||||||||||| | || || || ||||| ||||| | ||| | Sbjct 15203443 CCTCGTCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 15203384 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| | || | ||| ||||| || || ||||| || || || ||||| || || | Sbjct 15203383 TCAGCCAGTAGATAGCAGCAAATGAGCCCGAGAAGAAAATCCCCTCCACTGCTGCGAAAG 15203324 Query 33446 CAATAAGTCTCTCTCC 33461 | | ||| | ||| || Sbjct 15203323 CCACAAGACGCTCCCC 15203308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622925646026880