Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq13 244 1e-59 seq14 109 5e-19 seq12 105 6e-18 >seq13 Length=33524197 Score = 244 bits (270), Expect = 1e-59 Identities = 981/1516 (65%), Gaps = 58/1516 (4%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| | ||| ||||| |||| || ||| | || || | ||| ||| | | Sbjct 17856127 TTGACAATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCC 17856068 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || | |||||||| ||||||||||| || ||||| | || ||||||||| ||||| | Sbjct 17856067 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGC 17856008 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || | || ||| || || ||| | ||||| ||| ||| ||||| Sbjct 17856007 AGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCAC 17855948 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || |||||| || ||||||||||||||||| | |||||||| |||| |||| | Sbjct 17855947 AGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTGCTGACGGGCGAG 17855888 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCGCCTCCAGAG 145355 || | | | ||| ||| || | || ||||||||||| || |||||||| | Sbjct 17855887 CCCTCGTACGTCTCGTAGGGGCCG--AGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGG 17855830 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 || || || || |||||| || || ||||||||||| ||||| ||| ||| Sbjct 17855829 CGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCTTCGGGGCTTTCGA 17855770 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 |||| |||| ||| | || || ||||| || ||||| | || | ||||| |||| Sbjct 17855769 ACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCC 17855710 Query 145476 GATGTTTCATGTTG-----CTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGAT 145530 || | ||||| ||| | || ||| | ||| | | ||| |||||| Sbjct 17855709 TGTGACGCTTGTTGGACGTCTCGGCTTCAGGGACCGGGTAGTAGTT-GAT----GTCGAT 17855655 Query 145531 AATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAA 145590 || || || | |||| ||| | |||||| || | | || ||| | ||||| || Sbjct 17855654 GATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAA 17855595 Query 145591 ---CCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAAC 145647 ||| ||| ||| ||| | |||| |||||| || |||| || || || Sbjct 17855594 AGTCCG---CTCTGGCGTGACGT-ACA--TGTTGAGGGCGATGGAGGCCAGGTTGCAGAC 17855541 Query 145648 TGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGAT 145707 ||| ||| || | | |||| | || | ||| | ||| | |||||| |||||||| Sbjct 17855540 GGCCACCTCATCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGATTGCTGCATTTGAT 17855481 Query 145708 GGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 || ||||| || | ||| || || ||||||||||| |||||||||||||||||||| || Sbjct 17855480 CGTGCCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGG 17855421 Query 145768 TCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGCGC----ACG 145821 || || || ||| | ||| | ||| || || || | |||||| || Sbjct 17855420 CGTCCCGGTTTCGGTCTGGGACTCGATGAT--GGCGTACCAGAGCTGCTGCGCCTTTAC- 17855364 Query 145822 CACCTGCTGCTGGTAGCGGCCCT--CTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCG 145879 ||||| || | | | |||| |||| || ||| | ||||||||| ||| ||| | Sbjct 17855363 CACCTTCTTC----ACCCTCCCTTCCTTC-TCATATCTGGTGTAGAGCTTCTCGAACTCC 17855309 Query 145880 GAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCG 145939 || |||| ||| || || ||||||| | |||||||||||| ||||| | | Sbjct 17855308 TCTCCCCAGCACTCGTCTAGCCCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTGG 17855249 Query 145940 TTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC-- 145997 ||| | || | || ||| |||| || || | ||||| ||||| | | || | Sbjct 17855248 TTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGATCTCTG 17855189 Query 145998 GCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCG 146057 || || ||| ||||| || |||| ||||| | || | | | ||| Sbjct 17855188 GCTCTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGA 17855131 Query 146058 CGTGCCACGGTTCAATATAGACGGCGAGGGCTCC--TTTTCGT-TTGCCACCCTGGTCCA 146114 ||||||||| || | || | ||||| ||| || | || | ||||| |||||||| | Sbjct 17855130 AGTGCCACGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGA 17855071 Query 146115 CGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGT 146174 ||| || || ||||||| | || | || ||| || | | ||| ||| ||||| Sbjct 17855070 CGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGT 17855011 Query 146175 TCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGC 146234 | || | || | | || || || | ||| || |||||||| |||| Sbjct 17855010 TGGTGCCGGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGC 17854951 Query 146235 CGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTAT 146294 | || ||||||| || ||||| | || || || |||||||| || ||||| | Sbjct 17854950 CAGCGGACTTGGAAATGAGAGCGCACTGCTTCAGGGTGTCATAGATGCCTTCGATGCTGT 17854891 Query 146295 CG--CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGG--CGTCCCCGCC 146350 || |||| ||| ||||||| ||||| | ||| ||||| | ||| ||||| || Sbjct 17854890 CGTCCTTC--ATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGC--CGGTTGGTCCCGGCG 17854835 Query 146351 GAGAACAACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTC 146409 ||| | ||||| ||||| || || || || || | || | || || || Sbjct 17854834 TTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCG-ACAGGAGGTTGTAGGTCTC 17854776 Query 146410 GATAGCGTCTTGAATGTCGTCG-CCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTT 146468 ||| ||| | | ||||| ||| || || || || | | || | |||||||||||| | Sbjct 17854775 GATGGCGGCGTCGATGTC-TCGCCCGTGGATCCCAACTGACACCCTCATGAGCATGTGCT 17854717 Query 146469 GGGGCCGCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGT 146528 | |||||||| ||||||| || ||||| | || ||| | |||||| || ||| Sbjct 17854716 GCGGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGA 17854657 Query 146529 ATCCGAAAAATTTGTA 146544 | ||||| || ||||| Sbjct 17854656 AGCCGAAGAAGTTGTA 17854641 >seq14 Length=28338960 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | ||| || || | || | ||| |||||||| || |||||||| ||| Sbjct 16346999 GCCACCCCTAAGACGGAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 16346940 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 16346939 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 16346880 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || || || ||| || ||| | | ||| | || ||| ||| ||| | Sbjct 16346879 GATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCAC 16346820 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||| ||||| || || || ||||| |||||||| Sbjct 16346819 CTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 16346772 >seq12 Length=26439574 Score = 105 bits (116), Expect = 6e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| ||||| | || | ||| |||||||| || |||||||| || || |||||| Sbjct 2383312 ACGGAGCACCAGGTGGACGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCC 2383253 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 || || ||||| ||||| || |||| | | ||||||||| ||| | || |||||||| Sbjct 2383252 ATCTTCCAGCTGTTTGCCAGCAAAGATGAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTT 2383193 Query 131139 GTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAA 131197 || ||| | | ||||| | | ||| | ||||| ||| ||| | || | ||| | Sbjct 2383192 ATCC-TGAATCTTTGCTTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGA 2383134 Query 131198 CGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || || || || ||||| |||||||||||||| Sbjct 2383133 TGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 2383097 Score = 98.7 bits (108), Expect = 9e-16 Identities = 145/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| |||||||| || |||||||| || || |||||| || || ||||| ||||| Sbjct 2383522 GGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCC 2383463 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC-T 131155 || |||| | | ||||||||| ||| | || |||||||| || ||| | | ||| | Sbjct 2383462 AGCAAAGATCAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCC-TGAATCTTTGCCT 2383404 Query 131156 TGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAG 131215 | | | ||| | ||||| ||| ||| | || | ||| | ||| || || || || | Sbjct 2383403 TCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGG 2383344 Query 131216 TTTTTACGAAAATCTGCATGACT 131238 |||| || |||||||||||| || Sbjct 2383343 TTTTCACAAAAATCTGCATGCCT 2383321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471996468357120