Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq14 116 3e-21 seq12 107 2e-18 >seq14 Length=28338960 Score = 116 bits (128), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||||||||||| || ||| | | || |||| || Sbjct 16346974 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGC 16346915 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | || |||| ||| ||||| || | |||||| || || || || Sbjct 16346914 TTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTG 16346855 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | ||||||| ||||||| |||| |||||||||||| |||| Sbjct 16346854 GC--CTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGG 16346797 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || |||||||| Sbjct 16346796 TGAGGGTCTTGACGAAGATCTGCAT 16346772 Score = 100 bits (110), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| || ||||| || |||||||| | || ||| | | || |||| || Sbjct 16346518 TGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGC 16346459 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || ||| | || |||| ||| ||||| || | |||||| || || || || Sbjct 16346458 TTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTG 16346399 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| || || | | | ||||||| ||||||| |||| |||||||||||| |||| Sbjct 16346398 GCT--TTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGG 16346341 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || || |||||||| |||||||| || Sbjct 16346340 TGAGGGTCTTGACAAAGATCTGCATGTT 16346313 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| || || || || |||||||| | | ||| | | ||||||| ||| Sbjct 16342747 TGGAGGGTGGATTCTTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCATCCTCCAGCTGT 16342688 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTT-- 16850 ||||| ||| | || |||| ||| ||||| || | |||||| || || |||| Sbjct 16342687 TTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTG 16342628 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| || || | | | ||||| | ||||||| |||| |||||||||||| |||| Sbjct 16342627 GCT--TTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGG 16342570 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || |||||||| || |||||||| Sbjct 16342569 TGAGGGTTTTGACGAAGATCTGCAT 16342545 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||||| || ||| | | || Sbjct 16346755 AGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 16346696 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || || || ||| | || | || ||| ||||| || | |||||| || || Sbjct 16346695 TCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 16346636 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| ||| || | | | ||||| | ||||||| |||| ||||||||| Sbjct 16346635 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 16346576 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || ||||| || |||||||| Sbjct 16346575 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 16346544 >seq12 Length=26439574 Score = 107 bits (118), Expect = 2e-18 Identities = 149/206 (72%), Gaps = 5/206 (2%) Strand=Plus/Minus Query 16732 ATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTG 16791 |||| | ||||||||||| || ||||||||||| | || ||| | | || |||| || Sbjct 2383527 ATGCNG-GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTG 2383469 Query 16792 TTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAAT--T 16849 |||||| ||| | || || | ||| ||||| | | | ||| ||||| || ||| | Sbjct 2383468 TTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCCTGAATCTT 2383409 Query 16850 TGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCG 16909 ||| |||||| | | | || || | ||||||| |||| ||||||||| || || Sbjct 2383408 TGC--CTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCA 2383351 Query 16910 GTCAGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| |||||||||||||| Sbjct 2383350 GTGAGGGTTTTCACAAAAATCTGCAT 2383325 Score = 102 bits (112), Expect = 7e-17 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 16739 GTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCC 16798 ||||||||||| || ||||||||||| | || ||| | | || |||| |||||||| Sbjct 2383293 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 2383234 Query 16799 GCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAA--TTTGCTGCT 16856 ||| | || || | ||| ||||| | | | ||| ||||| || || |||||| | Sbjct 2383233 GCAAAGATGAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCCTGAATCTTTGCT--T 2383176 Query 16857 TCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCG 16916 |||| | | | || || | ||||||| |||| ||||||||| || || || || | Sbjct 2383175 TCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGG 2383116 Query 16917 TTTTGACAAAAATCTGCATTTT 16938 |||| || ||||||||||| || Sbjct 2383115 TTTTCACGAAAATCTGCATCTT 2383094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405074334356320