Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq13 425 7e-114 seq14 98.7 1e-15 >seq13 Length=33524197 Score = 425 bits (470), Expect = 7e-114 Identities = 1289/1978 (65%), Gaps = 29/1978 (1%) Strand=Plus/Minus Query 62098 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62157 |||||||||||| | ||| || | | | ||||| ||||| || ||||| | | Sbjct 17856215 CTGAATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 17856156 Query 62158 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62217 ||| || | | | ||||| || || || || | || || ||||| |||| || || Sbjct 17856155 CTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACAATCTGGAACTCTCCGGACAGCACCCT 17856096 Query 62218 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 62277 || ||||| || || ||||| |||| || | ||||| || || |||| || || || Sbjct 17856095 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 17856036 Query 62278 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62337 || || || || ||||| || |||| || | || || || | || | | | ||| Sbjct 17856035 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGAT 17855976 Query 62338 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62397 || || || || | | ||| | ||| || || | ||| | | Sbjct 17855975 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGG--CGTCTTCTCCCACATGTCG 17855918 Query 62398 T--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 62455 | || ||||| || || ||| || ||| || | || || ||||| || || || Sbjct 17855917 TACTGGAGAATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCT 17855858 Query 62456 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 62515 | || || || || || ||||| | || ||| || ||||| |||||||||| | Sbjct 17855857 GCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATG 17855798 Query 62516 TTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 62575 || || || ||||| |||| || || || | | || || || ||||| || Sbjct 17855797 TTGAGCAGCTGGGCTTCGGGGCTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCC 17855738 Query 62576 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62635 | || || || || || ||||| || || || | ||| || || | || ||||| || Sbjct 17855737 AGACCCTGGACGCCGATCCCGATCGGCCTGTGACGCTTGTTGGACGTCTCGGCTTCAGGG 17855678 Query 62636 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62695 | || || || || || || || || || ||||| ||| | || ||||| ||| || Sbjct 17855677 ACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACG 17855618 Query 62696 TCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATGCAACA 62752 ||| || || || || || ||| | || ||||||| | || | Sbjct 17855617 GAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGATG 17855558 Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGC 62810 || ||||| || || ||||| ||||||| | | | | || | | | ||| |||| Sbjct 17855557 GAGGCCAGGTTGCAGACGGCCACCTCATC--CTTGCTGGTGTACTCCACCACCTCCGTGC 17855500 Query 62811 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 62870 | ||||| || || ||||| || || | || | || || ||||| |||| || || | Sbjct 17855499 AGAGATTGCTGCATTTGATCGTGCCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAAGCGT 17855440 Query 62871 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 62930 |||| || || ||| | || || || ||||| |||| || || || || || | ||||| Sbjct 17855439 CCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGA 17855380 Query 62931 -CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATA--GTGTATACA 62987 | || | ||||||| | || ||| ||| | || ||| ||||| | Sbjct 17855379 GCTGCT-GCGCCTTTACCACCTTCTTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGC 17855321 Query 62988 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCA 63047 || |||||||| |||||||| | ||| || |||||||| || |||||||||| Sbjct 17855320 TTC--TCGAACTCCTCTCCCCAGCACTCGTCTAGCCCAGGACACTCGCTGGGACACATCA 17855263 Query 63048 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA-AAGAGCT 63106 | ||||| || || || ||||| ||||| || || ||||| ||||| ||| | Sbjct 17855262 AGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGT 17855203 Query 63107 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63166 | ||| |||||||||| ||| || ||||| |||||||| ||||| || || || ||||| Sbjct 17855202 AGAAA-AGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAG 17855144 Query 63167 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63226 | | | || | |||||||| |||| ||| ||||| | | || || | ||||| Sbjct 17855143 TCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTG 17855084 Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || ||||| || | ||| | ||| ||||| || |||||||||| ||| || | | || Sbjct 17855083 CCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCG 17855024 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 ||||| | || ||||| || | ||| |||||||| | | || || || | | Sbjct 17855023 TTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCC 17854964 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | || || || || || || || || | ||||| | || | || ||||||||| Sbjct 17854963 ACGCCGATCCCGCCAGCGGACTTGGAAATGAGAGCGCACTGCTTCAGGGTGTCATAGATG 17854904 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63466 || || || || || ||| ||||| || || || ||||| |||| || | || | Sbjct 17854903 CCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTG 17854844 Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || || || || | ||| ||||| ||||| || ||||| || || || || || ||| Sbjct 17854843 GTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTG 17854784 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || ||||| || || | ||| || || | || || || |||| || | ||| | | Sbjct 17854783 TAGGTCTCGATGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACTGACACCCTCATGAGC 17854724 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 |||||||| || | || | | || ||| || |||| || |||||| |||| | Sbjct 17854723 ATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGA 17854664 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 63706 || || || || || ||||||| || || |||| |||||||| || || ||||| Sbjct 17854663 GTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGAGGAATTGAGG 17854604 Query 63707 TTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATAGGAAAAT---G 63762 ||||| | || | || | || | || | ||| || || || ||| | | | Sbjct 17854603 CGGTCCTTGTTTTCCATGACGATGTCGAGTGT-CTCCTTGGAGATCATGGGAGAGTGGCG 17854545 Query 63763 TTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 63822 ||| || ||| ||||| ||| ||| | || |||||||| || || || | || Sbjct 17854544 TTT---GTTCAGAGGGTTGACGTAGGCGAACAGGTCTTCCATCACCTCGCTGAACACCTT 17854488 Query 63823 ttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGG 63882 || || || ||||| || || || ||||| || || || || || ||||| || || || Sbjct 17854487 CTTGGTCTCCTTGTGCAGGTTGGAGACGGCAATCCTCGCAGCCAGGATGGCGTAGTCGGG 17854428 Query 63883 ATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGT 63942 |||| || || ||||| || || || || || || ||||| | || || || || Sbjct 17854427 GTGTTTGGTCGTCAGGGTGGCCGCAATCTCTGCCGCTAGCGTGTCTAGCTCCACGGTGGT 17854368 Query 63943 TACACCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATC 64002 || || | || | || ||||| |||||||| | || | | | ||||| | | || Sbjct 17854367 GACGCCGCTGTACAAGCCCTGGATCACCTTCATGGTGATCTGAGTCGGATCCACAAAGTC 17854308 Query 64003 AGTGTTTAAGCCATAACATAATTTTCT-AATACGAGATGTGATTTTATCAAACATGAC 64059 | ||| | ||| || || || |||| || || || ||||||||||| |||||||| Sbjct 17854307 CGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGAC 17854251 Score = 93.3 bits (102), Expect = 5e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| || ||||| || || ||||| ||| | || || || || ||||| | Sbjct 17856478 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTTCCATAGTTGGGCTCAGCGATGTGGATGT 17856419 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| || || || || |||||||||||||| | |||||| ||||| | | | |||| Sbjct 17856418 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCTGCCATCCTCAGCACGGTCT 17856359 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62085 | || | |||||||||| |||||||| | |||| | || ||||| Sbjct 17856358 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCCTCTGG 17856310 >seq14 Length=28338960 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 ||||||||||||| ||||| || || |||||| || | || || || || || || | Sbjct 9808402 TCCATCCGTAAAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCGATGTGAATGT 9808461 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| ||| ||||| ||||||||| ||| || | ||||| ||||| || | | || | Sbjct 9808462 TCAGAGACTGACTCTGATCGATGTAGGTGCCACGATCTGCTGCCATCTTGAGGACGGTTT 9808521 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62085 | || | |||||||||| |||||||| | |||| | ||| ||||| Sbjct 9808522 TCTGGGAGATTTCCCAAACTGTTTTATAGAGCTGCTTCAGATCATCTGG 9808570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633610076332800