Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq14 123 2e-23 seq13 86.0 5e-12 >seq14 Length=28338960 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | ||||| ||||| |||| || || ||||| ||| Sbjct 16342545 ATGCAGATCTTCGTCAAAACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGT 16342604 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | ||||| ||||| || || |||||||| || || || || || Sbjct 16342605 GACACCATTGAGAACGTCAAAGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 16342664 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||||||| | |||||| ||||||| |||| || ||||| Sbjct 16342665 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAGGATGGCCGCACCCTCTCTGACTACAAT 16342724 Query 22399 ATTCAAAAAGAATCCACC 22416 || || |||||||||||| Sbjct 16342725 ATCCAGAAAGAATCCACC 16342742 Score = 118 bits (130), Expect = 9e-22 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 || ||| ||||| || ||||| || || | ||||| ||||| |||| || || ||||| Sbjct 16346309 TGCAAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGA 16346368 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 ||| ||| ||| | || | ||||| || || || || |||||||| || || || Sbjct 16346369 GCCCAGCGACACCATTGAGAACGTCAAAGCCAAGATCCAGGATAAGGAGGGCATCCCCCC 16346428 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 || || || | || || |||||||| || ||| | || ||| ||||||| | || || Sbjct 16346429 TGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGA 16346488 Query 22392 TTACAACATTCAAAAAGAATCCACC 22416 ||||| || ||||||||||||||| Sbjct 16346489 CTACAATATCCAAAAAGAATCCACC 16346513 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| ||||| |||| || || ||||| ||| | Sbjct 16346772 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGC 16346831 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || || |||||||| || || || || || Sbjct 16346832 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 16346891 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || ||| ||||||| | ||||| |||||| Sbjct 16346892 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 16346951 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 16346952 ATCCAGAAGGAGTCCACC 16346969 >seq13 Length=33524197 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/238 (68%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 130015 TCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTT 130074 || |||| ||||| |||| || || | ||||| |||||| || | ||||| ||| | Sbjct 17855242 TCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGATCTCTGGCTCTC 17855183 Query 130075 CTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCAC 130134 ||||| || |||| ||||| || ||||| ||| | | |||| ||||||| Sbjct 17855182 TGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCAC 17855123 Query 130135 GGTTCAACATAAATTGCCATTGCGCCCT---TCCGTTTGCCCCCTTGGTCAACGTGGCGC 130191 || || | || || || | || || || ||||| || ||||| |||| ||| Sbjct 17855122 GGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAGCGA 17855063 Query 130192 ACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGC 130249 | | |||||||| |||| || ||| | |||||||||||| ||||||| |||| Sbjct 17855062 GCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGC 17855005 Score = 82.4 bits (90), Expect = 6e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 129697 ATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCG 129756 || ||||||| ||||||||||| || | ||| ||||||| || | || | | Sbjct 17855560 ATGGAGGCCAGGTTGCAGACGGCCACCTCATCCTTGCTGGTGTACTCCACCACCTCCGTG 17855501 Query 129757 CACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCA 129816 || | ||| || ||| || ||||||| | ||| || || || ||| |||||||||| Sbjct 17855500 CAGAGATTGCTGCATTTGATCGTGCCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAAGCG 17855441 Query 129817 TCTTTGTACATCATGTACGGCGTGCCCGTTTCG 129849 || ||||| | |||||| ||||| || |||||| Sbjct 17855440 TCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCG 17855408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419713840475920