Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq7 93.3 9e-14 seq4 93.3 9e-14 seq90 91.5 3e-13 seq23 91.5 3e-13 seq21 91.5 3e-13 seq17 91.5 3e-13 seq14 91.5 3e-13 seq11 89.7 1e-12 seq18 87.8 4e-12 >seq7 Length=31413364 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 20409805 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 20409864 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 20409865 GCCCCACGTTGGGC 20409878 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 142497 TGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGG 142556 ||| | |||||| ||||||||||||||||||| ||||||||||||| |||||| || Sbjct 12700943 TGACAGAGCCCGATTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTAGG 12701002 Query 142557 TTCGAGCCCCACATCGGGCA 142576 |||||||||||| | ||||| Sbjct 12701003 TTCGAGCCCCACGTTGGGCA 12701022 >seq4 Length=31497199 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1417224 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1417283 Query 142563 CCCCACATCGGGCAGA 142578 |||||| | |||| || Sbjct 1417284 CCCCACGTTGGGCGGA 1417299 >seq90 Length=73419 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 455 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 396 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 395 CCCCACGTTGGGC 383 >seq23 Length=18084596 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 9278592 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 9278533 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 9278532 CCCCACGTTGGGC 9278520 >seq21 Length=25773841 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 19573042 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 19572983 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 19572982 CCCCACGTTGGGC 19572970 >seq17 Length=30788009 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 7047524 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 7047465 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 7047464 CCCCACGTTGGGC 7047452 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 16635972 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 16636031 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 16636032 TCCCGGCAGAGA 16636043 >seq14 Length=28338960 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 14774116 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 14774057 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 14774056 CCCCACGTTGGGC 14774044 >seq11 Length=28875558 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 24654168 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 24654227 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 24654228 CCCACGTTGGGC 24654239 >seq18 Length=22026651 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 142048 CGCATGTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGT 142106 |||| ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||| Sbjct 3122704 CGCA-GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGT 3122646 Query 142107 TCGACCCCCGCCAGAGA 142123 |||| |||| |||||| Sbjct 3122645 TCGAGTCCCGGCAGAGA 3122629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027800347767888