Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq14 170 4e-37 seq12 152 9e-32 seq13 105 1e-17 seq21 87.8 3e-12 >seq14 Length=28338960 Score = 170 bits (188), Expect = 4e-37 Identities = 181/236 (77%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | || || | ||| || | || | ||| || |||||||| || |||||||| | Sbjct 16347006 TTTACTGGCCACCCCTAAGACGGAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGT 16346947 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | ||||| || || | |||||||| | |||||| ||||| || || || || || |||| Sbjct 16346946 AGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGT 16346887 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | || || ||||| ||||| || || ||||| ||||| || ||| |||||||| |||| Sbjct 16346886 CAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC-GCTG 16346828 Query 68407 AT-TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||| |||||||||||| || ||||||||||||||||| |||||||| Sbjct 16346827 GGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 16346772 Score = 165 bits (182), Expect = 2e-35 Identities = 161/205 (79%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || ||||| ||||||||||| || || || || || || | |||||||| | ||| Sbjct 16346519 GTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTG 16346460 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| ||||| || || || || || ||||| || || ||||| ||||| || || ||||| Sbjct 16346459 CTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTT 16346400 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTTCCCG 68436 || |||||| ||| |||||||| |||| || || |||| |||||||||||| || | Sbjct 16346399 GGCTTTGACGTTCTCAATGGTGTC-GCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGG 16346341 Query 68437 TGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||| || |||||||| Sbjct 16346340 TGAGGGTCTTGACAAAGATCTGCAT 16346316 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || |||||||| || |||||||| || ||||| || || | |||||||| Sbjct 16346752 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 16346693 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || || | || || ||||| || || ||||| ||||| || || Sbjct 16346692 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 16346633 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || ||||||||| ||| |||||||| | || || |||| ||||||||| || Sbjct 16346632 ATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 16346573 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||||||||| |||||||| Sbjct 16346572 CCGGTGAGGGTCTTGACGAAGATCTGCAT 16346544 Score = 143 bits (158), Expect = 5e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || ||||| ||||| ||||| || || || ||||| || | ||||| || | ||| Sbjct 16342748 GTGGAGGGTGGATTCTTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCATCCTCCAGCTG 16342689 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 || || || || || || || || ||||| || || ||||| ||||| || || || || Sbjct 16342688 TTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTT 16342629 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 || |||||| ||| |||||||| | || || |||| |||||||||||| || || Sbjct 16342628 GGCTTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGT 16342569 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 |||||| |||||||| |||||||| Sbjct 16342568 GAGGGTTTTGACGAAGATCTGCAT 16342545 Score = 116 bits (128), Expect = 7e-21 Identities = 116/148 (78%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 68315 CTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAAT 68374 |||||| ||||| || || || || || ||||| || || ||||| ||||| || || || Sbjct 16341312 CTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAT 16341253 Query 68375 CTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTTC 68433 ||| |||||||| ||| |||||||| |||| || || |||| |||||||||||| | Sbjct 16341252 CTTGGCCTTGACATTCTCAATGGTGTC-GCTGGGCTCCACCTCCAGGGTGATGGTTTTGC 16341194 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||| || || || |||||||| Sbjct 16341193 CGGTGAGGGTTTTCACAAAGATCTGCAT 16341166 >seq12 Length=26439574 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || || | |||| ||| | |||||||| || |||||||| || || || Sbjct 2383323 CCTCCCCTGAGACGGAGCACCAGGTGGACGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 2383264 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||| || || || || |||||||| || ||||| || || Sbjct 2383263 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATGAGTCTCTGCTGGTCAGGAAGA 2383204 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| || || ||||||||||| || ||| ||| ||||| || | || || Sbjct 2383203 ATGCCTTCTTTATCCTGAATCTTTGCTTTCACGTTCTCAATGGTATCACTGGGCTCCACC 2383144 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || |||||||| || ||||| |||||||| Sbjct 2383143 TCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 2383097 Score = 143 bits (158), Expect = 5e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 |||||||| || |||||||| || || || || || | |||||||| | ||| || || Sbjct 2383521 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 2383462 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || || ||||| || ||||| || |||||||||| || || |||||||||||||| Sbjct 2383461 GCAAAGATCAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCCTGAATCTTTGCCTTC 2383402 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 ||| ||| ||||| || | || || |||| ||||||||| || || |||||||| Sbjct 2383401 ACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTT 2383342 Query 68445 TTGACGAATATCTGCAT 68461 || || || |||||||| Sbjct 2383341 TTCACAAAAATCTGCAT 2383325 >seq13 Length=33524197 Score = 105 bits (116), Expect = 1e-17 Identities = 597/944 (63%), Gaps = 24/944 (3%) Strand=Plus/Minus Query 31379 GGGACCGTGCTCTTCCGCGAGTTCGCAAGAGGCCTCCACCGCTGCAAAGTAAATATTCTC 31438 ||| ||| ||||| | ||||| ||||| |||||||| || || ||| || |||| Sbjct 17855870 GGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTC 17855811 Query 31439 AAAGATTTCCCGGTTGAGGTTCTTGGCCGCGTCAGAGTCAAAAGGCATGCGCAGCTTGAA 31498 ||||| | |||||| || ||| || || || || |||| | || Sbjct 17855810 GAAGATCTGGATGTTGAGCAGCTGGGCTTCGGGGCTTTCGAACGGGTGCCGCATCAGGAT 17855751 Query 31499 GAACACGTCCTGAAGACCCTGGACACCCACTCCAATTGGGCGCCGGCGCATGTTACTAGT 31558 ||| |||| ||||||||||| || | || || || | | ||| |||| || Sbjct 17855750 GAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGACGCTTGTTGGACGT 17855691 Query 31559 CTTCGCCTCGGGAATTGCGTAGGACATGACGTCAATGCTCTTGTCGAGGTTCTTGGCCAG 31618 || || || || | | |||| | ||| ||| ||| |||||| |||||| || | | Sbjct 17855690 CTCGGCTTCAGGGACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGAT 17855631 Query 31619 AATCTTCACGTGCTTGCGA--AGGTCCTCAAAGTCGTAGGCACCGTTCT----TGACGTA 31672 | ||| ||| | | || | || |||||| | | ||| ||| ||||||| Sbjct 17855630 TACCTTG--GTGACGGAGGCCAGCTTCTTGAAGTCGAAAGT-CCGCTCTGGCGTGACGTA 17855574 Query 31673 GTTCTGGAGGACGATGCTTCCAATGACACACACCGCCGTTTCGTCCGTAGAAGTGTATTC 31732 | | |||| ||||| | | | || || ||| || ||| | ||||| || Sbjct 17855573 CATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCATCCTTGCTGGTGTACTC 17855514 Query 31733 GACAATCTCGGCACAAAGATTGCTGCCCGTGATGGTGCCGGCATTGGACTGCATGTTCTT 31792 || | ||| | || |||||||||| |||| ||||| || ||| || |||| Sbjct 17855513 CACCACCTCCGTGCAGAGATTGCTGCATTTGATCGTGCCCAGGTTCTTCTGGTTGCTCTT 17855454 Query 31793 CACGTT-CACGCTGTCCTTGTTGAGCACGTAAGGCATGCCCGTCTCGATCTGCGTGATGA 31851 | ||| || || |||||||| ||||| ||| ||| | || || ||| |||| | || Sbjct 17855453 CCTGTTGCAAGC-GTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGA 17855395 Query 31852 TCATCGCATTCCAGACATCGCGCGCTTTGACGACTTTCTTCGCACGCCCCTCGGACTCGT 31911 | || || | ||||| | |||| || || || |||||| | | ||| || ||| | Sbjct 17855394 TGATGGCGTACCAGAGCTGCTGCGCCTTTACCACCTTCTTCACCCTCCCTTCCTTCTCAT 17855335 Query 31912 AGCGAAGATACAGGTCCTCGTACTCCTTGCCAAAGGCATCGGTTAGACCGGGACACTCCT 31971 | | || || | |||| |||||| || || ||| ||| || |||||||| Sbjct 17855334 ATCTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCTAGCCCAGGACACTCGC 17855275 Query 31972 TGGGGTCGAAGAGCGACCATGCGACATCGGCCTCTACTCGCTTCATGAACAGGTCGTTCA 32031 |||| | | ||||| | | | ||| |||| ||||||||||||||| | Sbjct 17855274 TGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGA 17855215 Query 32032 GCCACATCGCGTAAAACAGATTCCTGGCGCGTTGGGTCTCCTCACCCTGGTTACGTC-GG 32090 ||||| ||||| || |||| ||||| | || ||||| |||| | | || Sbjct 17855214 TCCACAAGGCGTAGAAAAGATCTCTGGCTCTCTGCTCCTCCT-TTCCTGTGTTCTTCTTC 17855156 Query 32091 AGCAGCAGGAAGTCCATGATGTCGGGGTGGTGGGGCTCGAGGTACACGGCGAA------A 32144 ||| ||||||||| | | |||| ||| ||||| ||||||| |||||| Sbjct 17855155 AGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCCCCG 17855096 Query 32145 GATCCCTTGCGGCGACCCCCCTGGTTTGCGTATGCAGATGTCGTGTCGTACACCTTCAGC 32204 | || |||| | || ||||||| |||| || || ||| ||| || ||||| Sbjct 17855095 GGTCTCTTGTTG---CCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGC 17855039 Query 32205 ATGGGTACGATGCCATCAGACTCGCCATTGGTCCCCTGGATCTTGGAACCACGGC-CGCG 32263 || || || | || | || | ||| ||||| || ||| | | || || | || Sbjct 17855038 ATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTTCC-CGTCGATCG 17854980 Query 32264 AATGTCGCTCAGGTGCAGGCCGATGCCGCCACCAAACTTGGAAA 32307 ||| ||||| || |||||| |||||| | ||||||||| Sbjct 17854979 GATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAA 17854936 >seq21 Length=25773841 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| ||| | ||||||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 1861809 CATGACACCCATCCTCTGGTACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTC 1861750 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 || |||||| |||||||||||| || |||||||| Sbjct 1861749 CAGAGAAATGTTCTCCATGAAGTCGAACGGGTTCTC 1861714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921590511864960