Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq13 672 0.0 seq21 118 2e-21 seq14 105 1e-17 seq11 96.9 7e-15 >seq13 Length=33524197 Score = 672 bits (744), Expect = 0.0 Identities = 1118/1597 (70%), Gaps = 50/1597 (3%) Strand=Plus/Minus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 || || |||| |||| |||| | | ||| | |||||||||||||| ||||||| Sbjct 17856208 GATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCC---GCGCTCC 17856152 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || ||| || ||||| ||| || | ||| |||||||| |||||||| | ||| Sbjct 17856151 GTCAGGTCCTTGAGGAGGTGAGGGTTGACAATCTGGAACTCTCCGGACAGCACCCTGCGG 17856092 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| ||||||| || || ||||||| ||| |||||||||| ||||| || ||| Sbjct 17856091 GTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 17856032 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 ||| || |||||||||| || |||||| |||||||||||||| || | ||| Sbjct 17856031 GACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTC 17855972 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATG 244306 | ||| ||||||||||||| | | |||| || || |||||||| Sbjct 17855971 TCCTTCAGCAGCTTCCAGTCCCACAGGTC-----GGTCGGCGTCTTCT----CCCACATG 17855921 Query 244307 TCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCG 244366 || |||| || | |||||||||||||| ||||||||| ||| |||||| ||| | Sbjct 17855920 TCGTACTGGAGAATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGA-G 17855862 Query 244367 CGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCAT 244425 | ||| ||| |||| ||||| | || |||||||||| ||||||||||||||||||| Sbjct 17855861 CTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTG 17855802 Query 244426 CTTGTTCATGTCGCGGGCCTT-GCCGCAGGTGAAGGGGATGCC-CATCATCATGAAGACG 244483 |||| | | || || ||| | || ||| ||| |||| ||||| |||||| || Sbjct 17855801 GATGTTGA-GCAGCTGGGCTTCGGGGCTTTCGAACGGG-TGCCGCATCAGGATGAAGGCG 17855744 Query 244484 TCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCT 244543 |||||||| ||||| |||||||| ||||| || ||||| ||||||||||| | |||| Sbjct 17855743 TCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGACGCTTGTTGGACGTCTCGGCT 17855684 Query 244544 TCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGG 244603 || || || ||||| ||||| |||||| | |||||||||||| ||| | | Sbjct 17855683 TCAGGGACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTG 17855624 Query 244604 ACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTC 244663 |||| ||||||| || |||||| | || || || ||| | | Sbjct 17855623 GTGACGGAGGCCAGCTTCTTGAAGTCGAA-----AG------TCCGCTCTGGCG----TG 17855579 Query 244664 ACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTG 244723 || || ||||||||||| | |||||||||||||||||||||||| ||| | ||||| Sbjct 17855578 ACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCATCCTTGCTGGTG 17855519 Query 244724 TACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTG 244783 |||| || | ||| |||||||| || ||||| ||||| |||||||||| || || ||| Sbjct 17855518 TACTCCACCACCTCCGTGCAGAGATTGCTGCATTTGATCGTGCCCAGGTTCTTCTGGTTG 17855459 Query 244784 GACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCG 244843 ||| |||||| |||||||||||||||||| ||||| |||||| ||| ||||| Sbjct 17855458 CTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGAC 17855399 Query 244844 ACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCC 244903 ||| || | || |||||| | | ||||| ||| | | || | || || | Sbjct 17855398 TCGATGATGGCGTACCAGAGCTGCTGCGCCTTTACCACCTTCTTCACCCTCCCTTCCTTC 17855339 Query 244904 TCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCAC 244963 || || | |||||| || ||||||||| |||||| ||||||||| || || ||| Sbjct 17855338 TCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCTAGCCCAGGACAC 17855279 Query 244964 GACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTC 245022 ||| ||| ||||| | ||| || | | || || |||| |||||| ||||| Sbjct 17855278 -TCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTC 17855220 Query 245023 GGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTT 245082 |||||||| | ||| | ||| || || |||| |||||||| ||| || |||||||| Sbjct 17855219 AGGGATCCACAAGGCGTAGAAAAGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTT 17855160 Query 245083 CCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGC 245142 | ||||||||| ||||| || ||||||| |||||| ||||||| ||| | |||| ||| Sbjct 17855159 CTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGC 17855100 Query 245143 GCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGC 245198 ||||| | ||||||||| |||||||| | | | ||||| |||| | | | Sbjct 17855099 CCCGGGTCTCTTGTTGCCGCCCTGGTCGA----CGTAGCGAGCCGTGTTGTTGTAAACTC 17855044 Query 245199 GCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGC 245258 ||| | || || | ||||| |||| |||||||||||| ||||||| ||| | Sbjct 17855043 TCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTTCCCGTCG 17854984 Query 245259 CCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGC 245318 | || | ||| | | || ||| | ||||| ||| |||||| ||||| ||||| Sbjct 17854983 ATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGAGCGCACT 17854924 Query 245319 TCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGG 245378 ||| | |||||| ||||| || |||||||| ||||||| |||||| |||||| Sbjct 17854923 GCTTCAGGGTGTCATAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGC 17854864 Query 245379 AGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGT 245438 ||||||||| ||| | | | | | |||||| || || || ||||||||| || Sbjct 17854863 TGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACC 17854804 Query 245439 AGCGGCT-CGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCG-CCGTGGAT 245496 | | || ||| |||| ||| |||| || ||||||||| | ||| |||||||| Sbjct 17854803 A-CTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCGGCGTCGATG-TCTCGCCCGTGGAT 17854746 Query 245497 CTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGTCCCTT 245556 | | | ||||||||| ||||||| ||| |||| | | || ||| Sbjct 17854745 CCCAACTGACACCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATCTT 17854686 Query 245557 GAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 |||| |||||||||||| || |||||||| || ||| Sbjct 17854685 CAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCGAAG 17854649 >seq21 Length=25773841 Score = 118 bits (130), Expect = 2e-21 Identities = 110/137 (80%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| ||||| ||||||| ||||| ||||||||||| || | |||||| Sbjct 1860780 GGAGAGAGAGTGGTGGCCTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCC 1860839 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 ||||||||||||| ||| ||| ||| | ||||||||| || |||||| ||||| || Sbjct 1860840 GCCATCTTCTGGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCAGCAACGAGCT 1860898 Query 42815 CATCAGCAGGGACGAGG 42831 ||||||| | ||||||| Sbjct 1860899 CATCAGCCGAGACGAGG 1860915 Score = 87.8 bits (96), Expect = 3e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||| | | ||||||||| ||||| | || ||||||||||||||||| ||||| Sbjct 1860411 TTCACGCAGGAGGTGCAGGTGACGGAGGCCAGGTGTTTCTACGGCTTCCAGATCGCCATG 1860470 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596 |||||| | ||||||||| ||||| | || ||||||| |||||| ||||||| | Sbjct 1860471 GAGAACATCCACTCTGAGATGTACAGCCTGCTCATCAACACCTACATCAAGGATCCCAGC 1860530 Query 42597 GAG 42599 ||| Sbjct 1860531 GAG 1860533 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| |||||||| ||||||||||| || ||||||| ||||||||||| || |||||||| Sbjct 1861719 CCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAGCG 1861778 Query 43130 CGTCGCCGACTACCAG 43145 |||| || |||||| Sbjct 1861779 GGTCGGGGAGTACCAG 1861794 >seq14 Length=28338960 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||| |||||||| || ||||| | ||| ||| ||||| || | |||||||| || Sbjct 9811792 CTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTAGCTCTCTGCTCTTC 9811851 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 || ||||||||| ||||||||||||| ||||| ||||| | ||||| ||||||| Sbjct 9811852 TTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCATGCCACGGCTCCAG 9811911 Query 245128 GTAGACAGCGAGGGCGCCGGG 245148 ||| |||| || ||| || || Sbjct 9811912 GTACACAGAGAAGGCCCCTGG 9811932 >seq11 Length=28875558 Score = 96.9 bits (106), Expect = 7e-15 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| | || || || || | || || ||||| || |||||||||||| | || || Sbjct 15203308 GGGGAGCGTCTTGTGGCTTTCGCAGCAGTGGAGGGGATTTTCTTCTCGGGCTCATTTGCT 15203367 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | |||| |||||| ||| ||| ||| || ||||| || || |||| ||| |||||||| Sbjct 15203368 GCTATCTACTGGCTGAAGAAGAGAGGCCTC-ATGCCAGGCCTTACCTACTCCAACGAACT 15203426 Query 42815 CATCAGCAGGGACGAGG 42831 ||| ||||||||||||| Sbjct 15203427 CATTAGCAGGGACGAGG 15203443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944306525863680