Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq13 159 4e-34 seq11 96.9 4e-15 seq21 84.2 3e-11 >seq13 Length=33524197 Score = 159 bits (176), Expect = 4e-34 Identities = 886/1391 (64%), Gaps = 44/1391 (3%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||||||||| Sbjct 17856088 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAC 17856029 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || ||||||||||| |||| || |||||||| | | || | || || ||| Sbjct 17856028 GCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCC 17855969 Query 114062 TTGAGGGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGG 114118 || || | |||||| | || | | |||| | || ||||| || ||||| Sbjct 17855968 TTCAGCAGCTTCCAGTCCCACAGGTCGGTCGGCGTCTTCTCC---CACATGTCGTACTGG 17855912 Query 114119 AGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCC 114178 || || || | | | | ||||| ||||| | |||||||| ||||| | | || Sbjct 17855911 AGAATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCG 17855852 Query 114179 AATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATT 114238 | ||| |||| ||||| ||||| ||||| || || ||||| || || | || | Sbjct 17855851 AGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGC 17855792 Query 114239 GCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCT 114298 || ||| ||| | || |||| | | || || || || | || || ||||| Sbjct 17855791 AGCTGGGCTTCGGGGCTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCC 17855732 Query 114299 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT-TCGAGCGGTCTCCACGGG 114357 ||||| |||| || || || | || | | | || ||| | ||| || || || Sbjct 17855731 TGGACGCCGATCCCGATCGGCCTGTGACGCTTGTTGGACGTCTCG-GCTTCAGGGACCGG 17855673 Query 114358 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 114417 || | || | ||||| | | | || || ||||| || ||||| |||| Sbjct 17855672 GTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGC 17855613 Query 114418 AAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 114477 ||||| | | | || ||| | || |||| |||| ||| | |||||||| || Sbjct 17855612 CAGCTTCTTGAAGTCGAAAGTCCG---CTCTGGCGTGACGTACATGTTGAGGGCGATGGA 17855556 Query 114478 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 114537 ||||| || || || | ||||||||| |||||||| | | ||||| || | Sbjct 17855555 GGCCAGGTTGCAGACGGCCACCTCATCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAG 17855496 Query 114538 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 114597 ||| | || || ||||||| |||||| || || ||| |||| || || ||||| Sbjct 17855495 ATTGCTGCATTTGATCGTGCCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAAGCGTCCTT 17855436 Query 114598 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT- 114656 ||| |||||||| |||||||| || || || ||||||| || || || | ||||| | Sbjct 17855435 GTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTG 17855376 Query 114657 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTT 114716 | ||| || || | || | | ||| |||| ||| || | |||||||| | Sbjct 17855375 CTGCGCCTTTACCACCTTC-TTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTTCT 17855317 Query 114717 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAAGAGAGAC 114775 | ||||| || ||| | ||| ||||| || || ||||| || | | ||| Sbjct 17855316 CGAACTCCTCTCCCCAGCACTCGTCTAGCCCAGGACACTCG-CTGGGACACATCAAGGAC 17855258 Query 114776 CATTGACCACCCTCCTCAACACGCT--TCATGAAGAGGTCTGGGATCCAGAGAGCTGAGA 114833 || | || | ||| ||| || ||||||| ||||| |||||||| | || ||| Sbjct 17855257 CAGT--CCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGA 17855200 Query 114834 AGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCC 114892 | ||||| | | | ||| || | | || || || || ||||| ||||| Sbjct 17855199 AAAGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGAAGTCG 17855141 Query 114893 ATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGACC 114948 | | || ||||||||| |||||||||| |||| | ||| || | | || Sbjct 17855140 AACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTG-CC 17855082 Query 114949 AGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATC 115008 |||||| || || | || ||| || | || | ||||| || | | || | Sbjct 17855081 GCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTT 17855022 Query 115009 AGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGC--TCTGA--CA--TCATGGAT 115062 || | ||| || || || || || ||| | | || || || ||| | Sbjct 17855021 GGAGTTGCCGTTGGTGCCGGCGATGT-AG-CTTCCCGTCGATCGGATGCAGCTCACCGC- 17854965 Query 115063 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 115122 || || || || || || |||| || || | ||||||| | | || || | || Sbjct 17854964 ---CACGCCGATCCCGCCAGCGGACTTGGAAATGAGAGCGCACTGCTTCAGGGTGTCATA 17854908 Query 115123 GATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCT 115182 ||| || ||||| ||| |||| | |||| ||||||||||| |||| || |||| Sbjct 17854907 GATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCC- 17854849 Query 115183 TGGT--GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACAT 115239 ||| || || |||||||||||||| || | |||||| ||||| || | | |||| Sbjct 17854848 -GGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAG 17854791 Query 115240 CTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCG 115299 | ||||||||| | | ||||| |||||| |||||| || || | || |||| Sbjct 17854790 GAGGTTGTAGGTCTCGATGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACTGACACCCT 17854731 Query 115300 CATAAACATGT 115310 ||| | ||||| Sbjct 17854730 CATGAGCATGT 17854720 >seq11 Length=28875558 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||||| || ||| || || ||||||||||| || | ||||| Sbjct 15203443 CCTCGTCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 15203384 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||| |||| | || ||| |||||| ||||||||||| || |||||||| ||||| | Sbjct 15203383 TCAGCCAGTAGATAGCAGCAAATGAGCCCGAGAAGAAAATCCCCTCCACTGCTGCGAAAG 15203324 Query 126186 CAAAGAGACGCTC 126198 | | |||||||| Sbjct 15203323 CCACAAGACGCTC 15203311 >seq21 Length=25773841 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| ||| |||||| || || |||| ||| || ||||| || || | ||||| Sbjct 1860915 CCTCGTCTCGGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1860856 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 ||| |||||| || || || ||||| |||||||||||||||||||| Sbjct 1860855 TCAGCCAGAAGATGGCGGCGAACGAACCAGAGAAGAAGATTCCCTCCAC 1860807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597332931565440