Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq14 120 3e-22 seq23 95.1 1e-14 seq25 93.3 5e-14 seq2 91.5 2e-13 >seq14 Length=28338960 Score = 120 bits (132), Expect = 3e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || ||||| |||||||| |||| ||| || || | || || |||||||| || || || Sbjct 16346506 TCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAG 16346447 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || | ||||||||| | || | || |||||| ||| ||| || ||||| || Sbjct 16346446 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCTTTGACGTTC 16346387 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||||| | ||||| || | |||||||||||||| || || ||||| ||| Sbjct 16346386 TCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACA 16346327 Query 42198 AAGATTTGCATTTT 42211 ||||| ||||| || Sbjct 16346326 AAGATCTGCATGTT 16346313 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || || || |||||||| |||| || || || | || || ||||| || ||||| || Sbjct 16342735 TCTTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAAG 16342676 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || | ||||||||| | || | || |||||| ||| |||||| ||||| || Sbjct 16342675 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTGACGTTC 16342616 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| || | ||||| || | |||||||||||||| || || || || || Sbjct 16342615 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTTTTGACG 16342556 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 16342555 AAGATCTGCAT 16342545 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | ||| || || | || || |||||||| || || || Sbjct 16346963 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 16346904 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | ||||||||| | || | || |||||| ||| ||| || || | | Sbjct 16346903 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATT 16346844 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||||| | ||||| || | |||||||||||||| || || ||||| || Sbjct 16346843 CTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGAC 16346784 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 16346783 GAAGATCTGCAT 16346772 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 26523234 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 26523175 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 26523174 TACTAACGAGGAATG 26523160 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 26511824 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 26511765 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 26511764 TACTAACGAGGA 26511753 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || || || || || | ||||||||| | || | || |||||| ||| | Sbjct 16341314 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 16341255 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || |||| || | | |||||||| | ||||| || | |||||||||||| Sbjct 16341254 ATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTG 16341195 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || || || || || |||||||| ||||| || Sbjct 16341194 CCGGTGAGGGTTTTCACAAAGATCTGCATCTT 16341163 >seq23 Length=18084596 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | |||||||||| ||||||||||||||||||||| |||||||||| Sbjct 6976960 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 6976901 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 6976900 CTATACTAACGAGGA 6976886 >seq25 Length=1457224 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 83778 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 83719 Query 57067 TACTACCGAGGATTGA 57082 ||||| |||||| ||| Sbjct 83718 TACTAACGAGGAATGA 83703 >seq2 Length=46286544 Score = 91.5 bits (100), Expect = 2e-13 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 57000 AAATTTT-CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| || |||| || | | |||||||||| ||||||||||||||||||||| ||||| Sbjct 7139619 AAATATTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 7139678 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||||||||| |||||| Sbjct 7139679 CACCACTATACTAACGAGGA 7139698 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||| Sbjct 26649123 TTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 26649064 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 26649063 TATACTAACGAGGA 26649050 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || || | ||||||||||||||||||||| ||||| |||| ||||| ||||||| Sbjct 11329798 CTCCCCGTCAGGGAATCGAACCCTGGTCTCCCGCCTGACAAGCGGGGATACTTACCACTA 11329857 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 11329858 TACTAACGAGGA 11329869 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 26636986 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 26637045 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 26637046 TACTAACGAGGA 26637057 Score = 82.4 bits (90), Expect = 8e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || || | |||||||| |||||||||||||||||| || | ||||| ||||||| Sbjct 11328092 CTCCCCGTCAGGGAATCGAACTCTGGTCTCCCGCGTGACAAGCRGGGATACTAACCACTA 11328151 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 11328152 TACTAACGAGGA 11328163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543194004837120