Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq13 262 4e-65 >seq13 Length=33524197 Score = 262 bits (290), Expect = 4e-65 Identities = 999/1550 (64%), Gaps = 61/1550 (4%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||| | |||||| ||||||||| || ||||| || ||||| | || | Sbjct 17854641 TACAACTTCTTCGGCTTCAAGACTCTGGAGCGCTCCTACCTGCTGAAGATCAACGGGAAA 17854700 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||||| ||||| || |||| ||| | || | | ||||| ||||| | ||| Sbjct 17854701 GTGGCCGAGCGGCCGCAGCACATGCTCATGAGGGTGTCAGTTGGGATCCACGGGCGAGAC 17854760 Query 93838 AT----GCCGA-ATGTTTTGCGGG-CTTTCAGAGACATGCGGGACAAGAGGTATACCATG 93891 || |||| || || | | | || | || ||| ||| ||| ||| Sbjct 17854761 ATCGACGCCGCCAT------CGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCAC 17854814 Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACC--CCGGTGCCACAGATGTCTTCGTGTTTCC 93949 ||| | |||||||| |||||||| |||||| |||| || ||| |||| || |||| Sbjct 17854815 GCCTCTCCGACCCTCTTCAACGCCGGGACCAACCGG--CCGCAGCTGTCCAGCTGCTTCC 17854872 Query 93950 TGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGA 94009 || | | | |||| |||| |||| || || | |||| ||| ||| | || || Sbjct 17854873 TGCTCGCCATGAAGGACGACAGCATCGAAGGCATCTATGACACCCTGAAGCAGTGCGCTC 17854932 Query 94010 CCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTT 94069 ||| || || | ||| || || ||||| | || | | | || | | ||| Sbjct 17854933 TCATTTCCAAGTCCGCTGGCGGGATCGGCGTGGCGGTGAGCTGCATCCGATCGACGGGAA 17854992 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 ||||||| ||| ||||| |||| ||||||||| | ||||| ||||| | || | || Sbjct 17854993 GCTACATCGCCGGCACCAACGGCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACA 17855052 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 ||||| |||| |||||||| |||||||| || | ||| || | ||||| | | Sbjct 17855053 ACAACACGGCTCGCTACGTCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGT 17855112 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 | || ||||| |||||| |||||| | ||| | || ||| |||||| || | Sbjct 17855113 ACCTGGAGCCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAA 17855172 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | || | |||| |||||||| || |||||||| | ||| | || ||||| || |||| Sbjct 17855173 AGGAGGAGCAGAGAGCCAGAGATCTTTTCTACGCCTTGTGGATCCCTGACCTGTTCATGA 17855232 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTT--TTTGTCCCAATGAATGTCCCGGACT 94367 | | || |||| ||| | |||| || || | ||||||| || ||||| || || Sbjct 17855233 AGAGAGTGGAGAGCAACCAGGACTGG--TCCTTGATGTGTCCCAGCGAGTGTCCTGGGCT 17855290 Query 94368 GTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAA 94427 ||| || ||| | || || | | || | | || || | | || | Sbjct 17855291 AGACGAGTGCTGGGGAGAGGAGTTCGAGAAGCTCTACACCAGATATGAGAAGGAAGGGAG 17855350 Query 94428 GGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGA 94487 || | |||||| | | || | |||| ||| | ||| | || ||| || Sbjct 17855351 GGTGAAGAAGGTGGTAAAGGCGCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCGA 17855410 Query 94488 GACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCA 94547 || || ||||||||||| | | ||||||| || |||| ||| ||||||| || | Sbjct 17855411 AACCGGGACGCCCTACATGCTCTACAAGGACGCTTGCAACAGGAAGAGCAACCAGAAGAA 17855470 Query 94548 CCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 ||| || |||||| || ||||| ||||| ||| | || ||||| || ||| Sbjct 17855471 CCTGGGCACGATCAAATGCAGCAATCTCTGCACGGAGGTGGTGGAGTACACCAGCAAGGA 17855530 Query 94608 CGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTA 94667 ||| | || || || ||||||| ||||||| ||| | || | || || | ||| Sbjct 17855531 TGAGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCT--CAACAT--GTACGTCACGCCAG 17855586 Query 94668 CACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGG--ATGGTC 94725 || ||| ||||| | || |||| | | || | |||| || || Sbjct 17855587 AGCGG--ACT------TTCGACTTCAAGAAGCTGGCCTCCGTCACC--AAGGTAATCGTG 17855636 Query 94726 TTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCA 94785 ||||| |||| | | ||||||| |||| |||||| ||||| || || |||| || Sbjct 17855637 AAAAACCTCAACAAGATCATCGACATCAACTACTACCCGGTCCCTGAAGCCGAGACGTCC 17855696 Query 94786 AACCTGAAGCATC---GGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTG 94842 ||| |||| || |||| ||||| ||||||||||||||| | || ||||| | | Sbjct 17855697 AAC---AAGCGTCACAGGCCGATCGGGATCGGCGTCCAGGGTCTGGCCGACGCCTTCATC 17855753 Query 94843 ATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAA 94902 ||||||| | || | ||| ||| || | | || | | || ||||| Sbjct 17855754 CTGATGCGGCACCCGTTCGAAAGCCCCGAAGCCCAGCTGCTCAACATCCAGATCTTCGAG 17855813 Query 94903 AGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCG-----GACGGCG 94957 | ||| || ||| ||| || | | ||| || | || ||| || || Sbjct 17855814 ACCATCTACCACGCCGCCCTGGA-------GGCCAGCTG-CGAGCTCGCCGCAGAGCTCG 17855865 Query 94958 GGCCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCT 95017 | || |||| ||| | || |||||| | |||||||| | |||| |||| | | Sbjct 17855866 GCCCCTACGAGACGTACGAGGGCTCGCCCGTCAGCAAGGGCATTCTCCAGTACGACATGT 17855925 Query 95018 GGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCT-CT--ACGCGCTGATGTTATCA 95074 ||| || ||| | | |||| |||||| ||||| || | | | ||| || Sbjct 17855926 GGGAGAAGACGCCGACCGACCTGTGGGACTGG-AAGCTGCTGAAGGAGAAGATCGC--CA 17855982 Query 95075 AACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGA 95134 |||| || |||| ||| ||||| |||| |||||||||||||| ||||| || |||| Sbjct 17855983 AACATGGCGTGAGGAACAGCCTGCTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGA 17856042 Query 95135 TCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGC 95194 |||| |||||||||||||| |||| | | |||| |||| | |||| | | |||||| Sbjct 17856043 TCCTGGGCAACAACGAGTCCATCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTGC 17856102 Query 95195 TCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACG 95244 | |||| || |||| | ||||| |||||||| |||||||||| Sbjct 17856103 TGTCCGGAGAGTTCCAGATTGTCAACCCTCACCTCCTCAAGGACCTGACG 17856152 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 93331 GTCATGTTCGACAAGATCACTACCAGGGTGCGCAAACTTTGCGAGGGTCTGGACTCTGAC 93390 ||||||||||| || ||||| || | | | || |||||| | || ||| || | ||| Sbjct 17854251 GTCATGTTCGATAAAATCACCTCCCGCATCCAGAAGCTTTGCTACGGCCTGAACCCGGAC 17854310 Query 93391 TTCGTGGATCCCGTCGAGGTCACCATGAGAGTGAATCAGGGAATATATGCCGGGGTCACA 93450 || |||||||| || ||||||||| |||| ||||| | || ||| ||||| Sbjct 17854311 TTTGTGGATCCGACTCAGATCACCATGAAGGTGATCCAGGGCTTGTACAGCGGCGTCACC 17854370 Query 93451 ACTGTCGAGCTCGATCTTCTGGCCGCGGAGACTTGTGCCTTCATGAGTACGAATCACCCG 93510 || || ||||| || || || || |||| | ||| | ||| || || ||||| Sbjct 17854371 ACCGTGGAGCTAGACACGCTAGCGGCAGAGATTGCGGCCACCCTGACGACCAAACACCCC 17854430 Query 93511 GACTACTCCATTTTGGCTGC 93530 |||||| |||| ||||||| Sbjct 17854431 GACTACGCCATCCTGGCTGC 17854450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494706082577280