Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq13 242 4e-59 seq12 91.5 1e-13 >seq13 Length=33524197 Score = 242 bits (268), Expect = 4e-59 Identities = 918/1419 (65%), Gaps = 40/1419 (3%) Strand=Plus/Minus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | | || | ||| ||||| ||||| || || || || |||| || || Sbjct 17856082 TTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTG 17856023 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAAC 153194 |||||| ||||| || || |||| || ||| || || | ||||||| | Sbjct 17856022 GGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGC 17855963 Query 153195 GCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT 153254 || ||| |||||||| | | ||| ||| | ||||||||||||||| | | || Sbjct 17855962 AGCTTCCAGTCCCACAGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCC 17855903 Query 153255 CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTG-GGCCAGTTCGCA 153313 ||| |||| ||| | |||| |||| |||| || || ||| || ||||| Sbjct 17855902 TTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGA-GCTCTGCGGCGAGCTCGCA 17855844 Query 153314 GCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGC 153373 ||| ||||| || ||| | | ||| ||||| ||| ||| || | ||||| | || Sbjct 17855843 GCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGC 17855784 Query 153374 TTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACC 153433 ||| ||| ||| |||| |||| ||| | |||||||||||||||||||||| || Sbjct 17855783 TTCGGGGCTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCC 17855724 Query 153434 GACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTC-GCTATGGGATAGTGAT 153492 || ||||| || | || || |||| || |||| || | | || |||| | Sbjct 17855723 GATCCCGATCGGCCTGTGACGCTTGTTG-GACGTCTCGGCTTCAGGGACCGGGTAGTAGT 17855665 Query 153493 TGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCT 153552 || ||||| || ||||||||||| ||| | || || || | | || |||| Sbjct 17855664 TGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCT 17855605 Query 153553 CGAAATCATAGGTCATTTC-GTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGA 153611 ||| || | ||| || | || |||| ||| || | ||| || || ||||| Sbjct 17855604 TGAAGTCGAAAGTCCGCTCTGGCGTGACGTA--CAT--GTTGAGGGCGATGGAGGCCAGG 17855549 Query 153612 TTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTG 153671 || ||||||||| ||| || | | |||||| ||| | ||| | |||||| |||||| Sbjct 17855548 TTGCAGACGGCCACCTCATCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGATTGCTG 17855489 Query 153672 CATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGC 153731 ||||| || ||||| || | ||| ||||| || | ||||| ||||| ||| ||||| Sbjct 17855488 CATTTGATCGTGCCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGC 17855429 Query 153732 ATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTA-TGCAGGTCCTGCGC 153790 ||||| || ||||| ||| || | |||| ||| | || || | |||||| Sbjct 17855428 ATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGAT-GGCGTACCAGAGCTGCTGCGC 17855370 Query 153791 ---TCGCACCCGCTGCCGATAGCGGCCC-TCGCTCTCGTATCGCTCGTACAGTCGCTCAA 153846 | |||| || | | | ||| || |||| |||| ||| || ||| | Sbjct 17855369 CTTTACCACCTTCTTC----ACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTTCTCGA 17855314 Query 153847 ACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACT-GATGCGGACACATCAGCGACCAC 153905 |||| || || |||| ||| | || || ||||||| | || |||||||||| ||||| Sbjct 17855313 ACTCCTCTCCCCAGCACTCGTCTAGCCCAGGACACTCGCTG-GGACACATCAAGGACCAG 17855255 Query 153906 ATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGG 153965 | || | | || | ||||||||| || || | ||| | ||||| | || Sbjct 17855254 TCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGA 17855195 Query 153966 TCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATAGA 154023 || | || | ||| |||||| || |||| ||||| | || | | | | Sbjct 17855194 TCTCTGGCTCTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACA 17855137 Query 154024 TGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC---TTTACGCTTTCCGCCCT 154080 |||| |||||| || || | ||| | ||| | ||| || | | || ||||||| Sbjct 17855136 CGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCT 17855077 Query 154081 GATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGG 154140 | ||||||| ||| || | |||||| | || | || ||| || ||| ||| | | | Sbjct 17855076 GGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGT 17855017 Query 154141 TGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTA-----AC 154195 |||||||||| ||| | ||| || || | |||||| | | || Sbjct 17855016 TGCCGTTGGTGCCGGCGATGTAGCTTCC-----CGTCGATCGGATGCAGCTCACCGCCAC 17854962 Query 154196 GCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCC 154255 ||| || ||||| || |||| || ||| |||||| | ||| || |||||||| Sbjct 17854961 GCCGATCCCGCCAGCGGACTTGGAAATGAGAGCGCACTGCTTCAGGGTGTCATAGATGCC 17854902 Query 154256 GTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGT 154315 |||||||| ||||| | | |||||| ||| || ||| ||||| | || Sbjct 17854901 TTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGT 17854842 Query 154316 TCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTA 154375 || || |||||||| ||| ||||| || ||| || | || | | ||| Sbjct 17854841 CCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTA 17854782 Query 154376 CGTTTCGATGGCGTCTTCGATATCATCG-CCGTGAATGCCGAGCGCGACGCGCATGAGCA 154434 || ||||||||| | ||||| || ||| ||||| || || | | || | |||||||| Sbjct 17854781 GGTCTCGATGGCGGCGTCGATGTC-TCGCCCGTGGATCCCAACTGACACCCTCATGAGCA 17854723 Query 154435 TGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCA 154473 |||||||||| || ||||| ||| | || ||||||| Sbjct 17854722 TGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATCTTCA 17854684 >seq12 Length=26439574 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || || || || || ||||| || | | Sbjct 2383518 GACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCA 2383459 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| ||| | || |||||||| || ||| | |||| || | Sbjct 2383458 AAGATCAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCC-TGAATCTTTGCCTTCAC 2383400 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||| || | | ||||||||| | || | || || ||||| || ||||| Sbjct 2383399 GTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTT 2383340 Query 138600 TACAAAAATCTGCATGGCT 138618 ||||||||||||||| || Sbjct 2383339 CACAAAAATCTGCATGCCT 2383321 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || || || || || ||||| || | | Sbjct 2383290 GACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCA 2383231 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| ||| | || |||||||| || ||| | |||| ||| | Sbjct 2383230 AAGATGAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCC-TGAATCTTTGCTTTCAC 2383172 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||| || | | ||||||||| | || | || || ||||| || ||||| Sbjct 2383171 GTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTT 2383112 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 2383111 CACGAAAATCTGCAT 2383097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496245229320960