Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq13 197 1e-45 seq14 105 6e-18 seq12 87.8 2e-12 >seq13 Length=33524197 Score = 197 bits (218), Expect = 1e-45 Identities = 519/777 (67%), Gaps = 30/777 (4%) Strand=Plus/Minus Query 146044 AGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGA 146103 ||| |||||| ||| | ||||||| | ||| ||||| |||| || || | | Sbjct 17856148 AGGTCCTTGAGGAGGTGAGGGTTGACAATCTGGAACTCTCCGGACAGCACCCTGCGGGTG 17856089 Query 146104 TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTA 146163 || | |||||||||| ||| ||||| ||||||||||| || || ||||| || || | Sbjct 17856088 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAC 17856029 Query 146164 GCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCC 146223 || || |||||| ||||| ||||| ||| |||||||| ||| | ||||| ||| Sbjct 17856028 GCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCC 17855969 Query 146224 C---GTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAA 146280 | || || ||| | ||||| | || || || | | | ||||||| Sbjct 17855968 TTCAGCAGCTT---CCAGTCCCACA---GGTCGGTCGGCGTCTTCTCCCACATGTCGTAC 17855915 Query 146281 TGCATAGTGCC---GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATC 146337 || | | |||| || || | | || |||||||| || || || ||| | || Sbjct 17855914 TGGAGAATGCCCTTGCTGACGGGCGAGCC---CTCGTACGTCTCGTAGGGGCCGA-GCTC 17855859 Query 146338 TT-GGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTA 146396 | ||| || |||||||| || ||||| || | ||| |||||||| |||| | Sbjct 17855858 TGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGAT 17855799 Query 146397 GTTGACGCTCCTGGCCTCCTCG-CTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCG 146454 ||||| || |||| || | | || ||| | ||| | || | || | ||||||||| Sbjct 17855798 GTTGA-GCAGCTGGGCTTCGGGGCTTTCGAACGGG-TGCCGCATCAGGATGAAGGCGTCG 17855741 Query 146455 GCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCC 146514 || |||||||| | |||| || | || | ||| |||||| | || || | Sbjct 17855740 GCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGACGCTTGTT---GGACGTCTCGGCT 17855684 Query 146515 GCAGTG---GGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTC 146571 ||| | || |||| |||| ||||||||||||||||||| || ||||| | || Sbjct 17855683 TCAGGGACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTG 17855624 Query 146572 GTCAAACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTG 146631 || | |||| |||| || || | | | ||| |||| || ||||| Sbjct 17855623 GTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCC--GCTCTGGCGT-GACGTACATGTTG 17855567 Query 146632 ACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATC 146691 | |||||| ||||||| ||| || ||||| ||| |||||| | |||| ||| | | Sbjct 17855566 AGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCATCCTTGCTGGTGTACTCCACCACC 17855507 Query 146692 TCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTG 146751 || | |||||| |||||||| ||||| |||||| || || ||||| || | ||||| Sbjct 17855506 TCCGTGCAGAGATTGCTGCATTTGATCGTGCCCAGGTTCTTCTGGTTGCTCTTCCTGTTG 17855447 Query 146752 CAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATG 146808 || | |||||||||||||||||| || |||||||||| | || ||||| |||| Sbjct 17855446 CAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATG 17855390 >seq14 Length=28338960 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || |||||||| |||||||| || || ||||| ||| || ||||| ||||| Sbjct 16346512 GTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 16346453 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||| ||| ||| || ||| Sbjct 16346452 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCTTTG 16346393 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | ||| | ||||||||||| || || Sbjct 16346392 ACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTC 16346333 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 16346332 TTGACAAAGATCTGCATG 16346315 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || ||||| ||| || ||||| ||||| Sbjct 16346740 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 16346681 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | |||||| || || || ||||||||||| ||| |||||| |||| Sbjct 16346680 GCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTG 16346621 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | ||| | || |||||||| || || Sbjct 16346620 ACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 16346561 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 16346560 TTGACGAAGATCTGCATG 16346543 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| || |||||||| || | ||||| ||| || |||||||| ||| Sbjct 16342741 GTGGATTCTTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCATCCTCCAGCTGTTTGCCA 16342682 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||| ||| |||||| ||| Sbjct 16342681 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTG 16342622 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | ||| | ||||||||||| || ||| Sbjct 16342621 ACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTT 16342562 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 16342561 TTGACGAAGATCTGCAT 16342545 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| ||||| || |||||| | |||||| || || || ||||||||||| ||| | Sbjct 16341314 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 16341255 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | || | |||||| | ||| || || | ||| | |||||| Sbjct 16341254 ATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTG 16341195 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || ||||| ||||| |||||||| Sbjct 16341194 CCGGTGAGGGTTTTCACAAAGATCTGCAT 16341166 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || ||||| ||| || ||||| || || Sbjct 16346968 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 16346909 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||| ||| ||| || ||| Sbjct 16346908 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 16346849 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | ||| | ||||||||||| || || Sbjct 16346848 ACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTC 16346789 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 16346788 TTGACGAAGATCTGCAT 16346772 >seq12 Length=26439574 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || ||||| ||| || |||||||| ||| Sbjct 2383521 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 2383462 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 || |||||| || |||||| || ||| | ||||| || || ||| ||| | | ||| || Sbjct 2383461 GCAAAGATCAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCC-TGAATCTTTGCCTT 2383403 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | || | ||| || | ||| || || | ||| | || || || || || || Sbjct 2383402 CACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGT 2383343 Query 127096 TTTTACAAAAATCTGCATGGCT 127117 ||| ||||||||||||||| || Sbjct 2383342 TTTCACAAAAATCTGCATGCCT 2383321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475484347672320