Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq13 197 1e-45 seq14 84.2 2e-11 >seq13 Length=33524197 Score = 197 bits (218), Expect = 1e-45 Identities = 893/1397 (64%), Gaps = 30/1397 (2%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 || || ||||| || || || ||||||||| | || | | || | ||||| || Sbjct 17854698 AAAGTGGCCGAGCGGCCGCAGCACATGCTCATGAGGGTGTCAGTTGGGATCCACGGGCGA 17854757 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 |||||||| ||| | ||| || ||| | | |||| | || | ||||| ||||| Sbjct 17854758 GACATCGACGCCGCCATCGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACGCC 17854817 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 ||| || | ||| |||||| || || ||| ||| |||| || || ||||| Sbjct 17854818 TCTCCGACCCTCTTCAACGCCGGGACCAACCGGCCGCAGCTGTCCAGCTGCTTCCTGCTC 17854877 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || || || ||||||||| || |||||||| || || | ||||| | ||| Sbjct 17854878 GCCATGAAGGACGACAGCATCGAAGGCATCTATGACACCCTGAAGCAGTGCGCTCTCATT 17854937 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAG-GCCGCGGAAGCCG 123196 ||||| | | ||||| || |||||| ||| | | | || | || |||||| Sbjct 17854938 TCCAAGTCCGCTGGCGGGATCGGCGTGGCGGTGAGCTGCATCCGATCGACG-GGAAGCTA 17854996 Query 123197 CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAA 123256 |||| ||||| |||| | | || ||| | | | |||||| |||||||||| || Sbjct 17854997 CATCGCCGGCACCAACGGCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACAACAA 17855056 Query 123257 CGCCGTGCGGCACGTCGACCAGGGCGGCAA-ACGCAA--AGGCGCGATGGCGATCTATCT 123313 | | | || ||||||||||||||||||| | | | || || | || || || || Sbjct 17855057 CACGGCTCGCTACGTCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTACCT 17855116 Query 123314 AGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGA 123373 || ||||||||| | || |||| ||| || | | | || |||| || ||| Sbjct 17855117 GGAGCCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGA 17855176 Query 123374 AGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACG 123433 || ||| |||| | ||| | || ||||| || ||| | || || |||| ||| | Sbjct 17855177 GGAGCAGAGAGCCAGAGATCTTTTCTACGCCTTGTGGATCCCTGACCTGTTCATGAAGAG 17855236 Query 123434 CGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCG-GTGTCC-CGGCTTGAGC 123491 || | | || | ||||| | ||||||||| | || |||||| |||| || | Sbjct 17855237 AGTGGAGAGCAACCAGGACTGGTCCTTGATGTGTCCC-AGCGAGTGTCCTGGGCTAGA-C 17855294 Query 123492 GACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCA----- 123546 || | || | |||| || || | ||| | ||| ||| ||||| | Sbjct 17855295 GAGTGCTGGGGAGAGGAGTTCGAGAAGCTCTACACCAGATATGAGAAGGAAGGGAGGGTG 17855354 Query 123547 AACAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCG 123606 || | | | || | | | ||| | | || | | || ||||| | || || Sbjct 17855355 AAGAAGGTGGTAAAGGCGCAGCA---GCTCTGGT--ACGCCATCATCGAGTCCCAGACCG 17855409 Query 123607 AAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCA 123666 ||||||| ||||| |||||||||||||| ||||| ||||||||||| | ||| |||| | Sbjct 17855410 AAACCGGGACGCCCTACATGCTCTACAAGGACGCTTGCAACAGGAAGAGCAACCAGAAGA 17855469 Query 123667 ACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCG 123726 || |||| || || ||||| || ||||| ||| | || | | || |||| | | Sbjct 17855470 ACCTGGGCACGATCAAATGCAGCAATCTCTGCACGGAGGTGGTGGAGTACACCAGCAAGG 17855529 Query 123727 ATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGT----CGAAAAC 123782 || | |||||||| || || |||| || || | | || | ||| | | | | Sbjct 17855530 ATGAGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCAGAGC 17855589 Query 123783 GGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAAC 123842 || |||| | ||| | | ||| | | || || | || || || | ||| Sbjct 17855590 GG-ACTTTCGACTTCAAGAAGCTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCTCAAC 17855648 Query 123843 AAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACAC 123902 || || ||||| | || | || || | ||||| ||| || | ||| Sbjct 17855649 AAGATCATCGACATCAACTACTACCCGGTCCCTGAAGCCGAGACGTCCAACAAGCGTCAC 17855708 Query 123903 AGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCG 123962 || ||| |||| | ||| | || || |||||||||| || | || |||| ||| Sbjct 17855709 AGGCCGATCGGGATCGGCGTCCAGGGTCTGGCCGACGCCTTCATCCTGATGCGGCACCCG 17855768 Query 123963 TACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGC 124022 | ||||||| |||||| || |||| || | || || ||| || || || ||| | Sbjct 17855769 TTCGAAAGCCCCGAAGCCCAGCTGCTCAACATCCAGATCTTCGAGACCATCTACCACGCC 17855828 Query 124023 GCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGC 124082 || ||||||| |||||||| || || | | |||| | ||||| | |||| |||| Sbjct 17855829 GCCCTGGAGGCCAGCTGCGAGCTCGCCGCAGAGCTCGGCCCCTACGAGACGTACGAGGGC 17855888 Query 124083 -AGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTT 124141 ||||| | ||| || ||| | ||||||||||||||| | || ||||| | | Sbjct 17855889 TCGCCCGTC-AGCAAGGGCATTCTCCAGTACGACATGTGGGAGAAGACGCCGACCGACCT 17855947 Query 124142 GTGGGACTGGAGCGTTTTAAAACAACGCATATCG--ACGCACGGTTTGCGTAACTCGCTG 124199 ||||||||||| | | || | | | |||| | || || || | ||| ||| Sbjct 17855948 GTGGGACTGGAAGCTGCTGAAGGA--GAAGATCGCCAAACATGGCGTGAGGAACAGCCTG 17856005 Query 124200 TTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTC 124259 || ||||| |||||| ||||| |||| || || || | || |||||||| ||| || Sbjct 17856006 CTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATC 17856065 Query 124260 GAGCCGTTCACTAACAA 124276 ||| ||| ||| | ||| Sbjct 17856066 GAGGCGTACACCAGCAA 17856082 >seq14 Length=28338960 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || ||||| || |||||||| || || || ||| ||| ||| Sbjct 16342753 ACAAGGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCATCCTCC 16342694 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| || || | |||| | |||||||| || || ||||| || ||||| || Sbjct 16342693 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 16342634 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| ||||| || | || | |||||| | ||| || || || || | ||||| Sbjct 16342633 ATTTTGGCTTTGA-CGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTT 16342575 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || ||||| || || || ||||| Sbjct 16342574 GCCGGTGAGGGTTTTGACGAAGATCTGCAT 16342545 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || ||||| ||||||||||| || || | ||| ||| ||| Sbjct 16346524 ACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCC 16346465 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || ||||| || | |||| | |||||||| || || ||||| || ||||| || Sbjct 16346464 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 16346405 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || ||||| || | || | ||||||| | ||| || || || || | ||||| Sbjct 16346404 ATCTTGGCTTTGA-CGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTT 16346346 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || || ||||| || ||||| Sbjct 16346345 GCCGGTGAGGGTCTTGACAAAGATCTGCAT 16346316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451987560689280